miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27229 3' -54.3 NC_005832.1 + 75765 0.66 0.877589
Target:  5'- gAGGUCcGCUGC---GGGCGAGAGgUCCa -3'
miRNA:   3'- -UUCAGaCGACGgugUCCGUUUUC-GGG- -5'
27229 3' -54.3 NC_005832.1 + 72622 0.66 0.877589
Target:  5'- aGGGUCcgaaUGgaGUCGCGGGUcccgauGGGCCCg -3'
miRNA:   3'- -UUCAG----ACgaCGGUGUCCGuu----UUCGGG- -5'
27229 3' -54.3 NC_005832.1 + 68602 0.66 0.877589
Target:  5'- cAGUgUGC-GCCGCGGGCcuuGAuCCCu -3'
miRNA:   3'- uUCAgACGaCGGUGUCCGuu-UUcGGG- -5'
27229 3' -54.3 NC_005832.1 + 101807 0.66 0.877589
Target:  5'- aGAGUCUGC-GUUgACGGGgcCAAAGGCCa -3'
miRNA:   3'- -UUCAGACGaCGG-UGUCC--GUUUUCGGg -5'
27229 3' -54.3 NC_005832.1 + 38750 0.66 0.869875
Target:  5'- cAAGagUGCgGUCcaguuuGCGGGCuGGAGCCCa -3'
miRNA:   3'- -UUCagACGaCGG------UGUCCGuUUUCGGG- -5'
27229 3' -54.3 NC_005832.1 + 66656 0.66 0.869875
Target:  5'- uGGGUCagacGCUGCCACcccaaAGGCGuaccucaggugaGGGGUCCu -3'
miRNA:   3'- -UUCAGa---CGACGGUG-----UCCGU------------UUUCGGG- -5'
27229 3' -54.3 NC_005832.1 + 95697 0.66 0.861922
Target:  5'- cAGUCaccgGCagcgGCCGCggAGGCu--AGCCCg -3'
miRNA:   3'- uUCAGa---CGa---CGGUG--UCCGuuuUCGGG- -5'
27229 3' -54.3 NC_005832.1 + 87674 0.66 0.861922
Target:  5'- -cGUCUGUgaugGCCGagucCAGGAGCCCg -3'
miRNA:   3'- uuCAGACGa---CGGUguccGUUUUCGGG- -5'
27229 3' -54.3 NC_005832.1 + 88192 0.66 0.848713
Target:  5'- aAAGUCUGUuccgGCUAUgucggcagaugacagGGGCGAAgaggacgggGGCCCg -3'
miRNA:   3'- -UUCAGACGa---CGGUG---------------UCCGUUU---------UCGGG- -5'
27229 3' -54.3 NC_005832.1 + 443 0.66 0.848713
Target:  5'- cAGUCUGCcGCUcCGGGguucuugauacagaAGGAGCCCa -3'
miRNA:   3'- uUCAGACGaCGGuGUCCg-------------UUUUCGGG- -5'
27229 3' -54.3 NC_005832.1 + 98168 0.66 0.845321
Target:  5'- ---cCUGUgGCCccaggACAGGCucAGGCCCa -3'
miRNA:   3'- uucaGACGaCGG-----UGUCCGuuUUCGGG- -5'
27229 3' -54.3 NC_005832.1 + 26308 0.66 0.845321
Target:  5'- gGGGaCUGCUGUCGCAGuucCGAAccucuGCCCg -3'
miRNA:   3'- -UUCaGACGACGGUGUCc--GUUUu----CGGG- -5'
27229 3' -54.3 NC_005832.1 + 13319 0.66 0.845321
Target:  5'- uGGUCUuGCcgGCCAUcuGGGaCAGGGGCaCCg -3'
miRNA:   3'- uUCAGA-CGa-CGGUG--UCC-GUUUUCG-GG- -5'
27229 3' -54.3 NC_005832.1 + 788 0.66 0.844468
Target:  5'- uGGGUCUuuuuuauGCggGCgCACAGgggcugagagguGCAGAAGCCCg -3'
miRNA:   3'- -UUCAGA-------CGa-CG-GUGUC------------CGUUUUCGGG- -5'
27229 3' -54.3 NC_005832.1 + 77484 0.67 0.827849
Target:  5'- ---aCUGCaGCCGCGGcccCAAAAGUCCa -3'
miRNA:   3'- uucaGACGaCGGUGUCc--GUUUUCGGG- -5'
27229 3' -54.3 NC_005832.1 + 81952 0.67 0.827849
Target:  5'- -uGUUccugUGCUGCCAaaucguGGUuGAGGCCCu -3'
miRNA:   3'- uuCAG----ACGACGGUgu----CCGuUUUCGGG- -5'
27229 3' -54.3 NC_005832.1 + 91195 0.67 0.818808
Target:  5'- cAAGUCUGcCUGUCGucGGC-GAGGUCCg -3'
miRNA:   3'- -UUCAGAC-GACGGUguCCGuUUUCGGG- -5'
27229 3' -54.3 NC_005832.1 + 38508 0.67 0.818808
Target:  5'- uAGUCUGCgaaaGCCugGuacucacagucuGGCAu--GCCCa -3'
miRNA:   3'- uUCAGACGa---CGGugU------------CCGUuuuCGGG- -5'
27229 3' -54.3 NC_005832.1 + 96952 0.67 0.818808
Target:  5'- --cUCUGCUGUCuuuccCAGGagccucuuGAAGCCCg -3'
miRNA:   3'- uucAGACGACGGu----GUCCgu------UUUCGGG- -5'
27229 3' -54.3 NC_005832.1 + 1501 0.67 0.800162
Target:  5'- aGAG-UUGCagUGCCugGGGuCGGGAGCCg -3'
miRNA:   3'- -UUCaGACG--ACGGugUCC-GUUUUCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.