miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2723 5' -59.8 NC_001491.2 + 142951 1.1 0.001254
Target:  5'- cACCUUCCACCCACGUCCACACCCCCCc -3'
miRNA:   3'- -UGGAAGGUGGGUGCAGGUGUGGGGGG- -5'
2723 5' -59.8 NC_001491.2 + 6482 0.76 0.240475
Target:  5'- aACCgua-ACCUugGUUCACACCCCCUg -3'
miRNA:   3'- -UGGaaggUGGGugCAGGUGUGGGGGG- -5'
2723 5' -59.8 NC_001491.2 + 113090 0.74 0.337743
Target:  5'- cCCUUCCGCUUcCGgCCACGCCCCUUc -3'
miRNA:   3'- uGGAAGGUGGGuGCaGGUGUGGGGGG- -5'
2723 5' -59.8 NC_001491.2 + 125145 0.73 0.352686
Target:  5'- uGCCaacCCGCCCcaccuCGUCUugGCCCCCa -3'
miRNA:   3'- -UGGaa-GGUGGGu----GCAGGugUGGGGGg -5'
2723 5' -59.8 NC_001491.2 + 137771 0.73 0.360332
Target:  5'- gGCgUUCCAUCCACGU-CACGUCUCCCg -3'
miRNA:   3'- -UGgAAGGUGGGUGCAgGUGUGGGGGG- -5'
2723 5' -59.8 NC_001491.2 + 123115 0.72 0.417005
Target:  5'- gGCCcggcgCCGCUCcggagcGCGUCCGCugCCUCCg -3'
miRNA:   3'- -UGGaa---GGUGGG------UGCAGGUGugGGGGG- -5'
2723 5' -59.8 NC_001491.2 + 63837 0.72 0.425535
Target:  5'- gGCCggugUCCuccagcucaGCCCGCGUgUACACCUCCa -3'
miRNA:   3'- -UGGa---AGG---------UGGGUGCAgGUGUGGGGGg -5'
2723 5' -59.8 NC_001491.2 + 50342 0.71 0.497268
Target:  5'- cGCCg-CCACCCACG-CCGCAgUCgCCg -3'
miRNA:   3'- -UGGaaGGUGGGUGCaGGUGUgGGgGG- -5'
2723 5' -59.8 NC_001491.2 + 120788 0.71 0.497268
Target:  5'- -aCUUCUuauccguUCCACGcCCcCACCCCCCg -3'
miRNA:   3'- ugGAAGGu------GGGUGCaGGuGUGGGGGG- -5'
2723 5' -59.8 NC_001491.2 + 60706 0.71 0.497268
Target:  5'- cACCUagauuaUCCAaaUCCACGUCUaagGCGUCCCCCa -3'
miRNA:   3'- -UGGA------AGGU--GGGUGCAGG---UGUGGGGGG- -5'
2723 5' -59.8 NC_001491.2 + 140090 0.71 0.497268
Target:  5'- cGCCgggCCGCCCGCGgaggCCugGCCgCgCg -3'
miRNA:   3'- -UGGaa-GGUGGGUGCa---GGugUGGgGgG- -5'
2723 5' -59.8 NC_001491.2 + 11892 0.7 0.506624
Target:  5'- cACCUgggaUCAa-CACGUCCGUGCCCCCCg -3'
miRNA:   3'- -UGGAa---GGUggGUGCAGGUGUGGGGGG- -5'
2723 5' -59.8 NC_001491.2 + 1790 0.7 0.506624
Target:  5'- cGCCgUCCacGCCCGCGgCCGCucuGCCCCgCg -3'
miRNA:   3'- -UGGaAGG--UGGGUGCaGGUG---UGGGGgG- -5'
2723 5' -59.8 NC_001491.2 + 96558 0.7 0.516055
Target:  5'- aAUCUUCCGa-CAUGUCCAgcccggACCCCCCg -3'
miRNA:   3'- -UGGAAGGUggGUGCAGGUg-----UGGGGGG- -5'
2723 5' -59.8 NC_001491.2 + 113033 0.7 0.516055
Target:  5'- gACCccCC-CCCuuaGaCCACGCCCCCCu -3'
miRNA:   3'- -UGGaaGGuGGGug-CaGGUGUGGGGGG- -5'
2723 5' -59.8 NC_001491.2 + 97882 0.7 0.516055
Target:  5'- aACCUUaacuCCCAuuCGUUUACAUCCCCCu -3'
miRNA:   3'- -UGGAAggu-GGGU--GCAGGUGUGGGGGG- -5'
2723 5' -59.8 NC_001491.2 + 99025 0.7 0.525555
Target:  5'- cGCCggCUACCaGCuGUUCGCagGCCCCCCg -3'
miRNA:   3'- -UGGaaGGUGGgUG-CAGGUG--UGGGGGG- -5'
2723 5' -59.8 NC_001491.2 + 118329 0.7 0.544748
Target:  5'- uGCCgcCCAgCCgGCGUCCccgGCACCCagCCCg -3'
miRNA:   3'- -UGGaaGGU-GGgUGCAGG---UGUGGG--GGG- -5'
2723 5' -59.8 NC_001491.2 + 26053 0.7 0.544748
Target:  5'- aACCgauguacaCACCCACGcCUACAUaccaCCCCCa -3'
miRNA:   3'- -UGGaag-----GUGGGUGCaGGUGUG----GGGGG- -5'
2723 5' -59.8 NC_001491.2 + 121991 0.7 0.55443
Target:  5'- gACUcgucgCCGCUCACGUCaCACuCCuCCCCa -3'
miRNA:   3'- -UGGaa---GGUGGGUGCAG-GUGuGG-GGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.