miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2723 5' -59.8 NC_001491.2 + 1790 0.7 0.506624
Target:  5'- cGCCgUCCacGCCCGCGgCCGCucuGCCCCgCg -3'
miRNA:   3'- -UGGaAGG--UGGGUGCaGGUG---UGGGGgG- -5'
2723 5' -59.8 NC_001491.2 + 2513 0.69 0.563187
Target:  5'- gGCCUggcagggUCCgGCCCGCGUCa--GCCCCUa -3'
miRNA:   3'- -UGGA-------AGG-UGGGUGCAGgugUGGGGGg -5'
2723 5' -59.8 NC_001491.2 + 3145 0.66 0.777446
Target:  5'- uGCCcgggCCGCCCgACGUCCggagcgauucGCACCUCa- -3'
miRNA:   3'- -UGGaa--GGUGGG-UGCAGG----------UGUGGGGgg -5'
2723 5' -59.8 NC_001491.2 + 6482 0.76 0.240475
Target:  5'- aACCgua-ACCUugGUUCACACCCCCUg -3'
miRNA:   3'- -UGGaaggUGGGugCAGGUGUGGGGGG- -5'
2723 5' -59.8 NC_001491.2 + 11892 0.7 0.506624
Target:  5'- cACCUgggaUCAa-CACGUCCGUGCCCCCCg -3'
miRNA:   3'- -UGGAa---GGUggGUGCAGGUGUGGGGGG- -5'
2723 5' -59.8 NC_001491.2 + 21204 0.66 0.786396
Target:  5'- aACCgUUCCGguguuugcgccCCCGCuGUCa--ACCCCCCc -3'
miRNA:   3'- -UGG-AAGGU-----------GGGUG-CAGgugUGGGGGG- -5'
2723 5' -59.8 NC_001491.2 + 22648 0.66 0.749895
Target:  5'- aACCagCgCACCCcauuuuCGggUACGCCCCCCg -3'
miRNA:   3'- -UGGaaG-GUGGGu-----GCagGUGUGGGGGG- -5'
2723 5' -59.8 NC_001491.2 + 26053 0.7 0.544748
Target:  5'- aACCgauguacaCACCCACGcCUACAUaccaCCCCCa -3'
miRNA:   3'- -UGGaag-----GUGGGUGCaGGUGUG----GGGGG- -5'
2723 5' -59.8 NC_001491.2 + 36767 0.67 0.731029
Target:  5'- aGCCUaucaCUACCaCAuCGgCCugaGCGCCCCCCg -3'
miRNA:   3'- -UGGAa---GGUGG-GU-GCaGG---UGUGGGGGG- -5'
2723 5' -59.8 NC_001491.2 + 36942 0.69 0.573938
Target:  5'- gACUUgcuaCCGgCCACaGUCCAgGCCCgCCCu -3'
miRNA:   3'- -UGGAa---GGUgGGUG-CAGGUgUGGG-GGG- -5'
2723 5' -59.8 NC_001491.2 + 50342 0.71 0.497268
Target:  5'- cGCCg-CCACCCACG-CCGCAgUCgCCg -3'
miRNA:   3'- -UGGaaGGUGGGUGCaGGUGUgGGgGG- -5'
2723 5' -59.8 NC_001491.2 + 57951 0.69 0.582771
Target:  5'- uGCCggCCACCCugGcucuggCCGCuucagacauguugGCCCCuCCg -3'
miRNA:   3'- -UGGaaGGUGGGugCa-----GGUG-------------UGGGG-GG- -5'
2723 5' -59.8 NC_001491.2 + 60706 0.71 0.497268
Target:  5'- cACCUagauuaUCCAaaUCCACGUCUaagGCGUCCCCCa -3'
miRNA:   3'- -UGGA------AGGU--GGGUGCAGG---UGUGGGGGG- -5'
2723 5' -59.8 NC_001491.2 + 63837 0.72 0.425535
Target:  5'- gGCCggugUCCuccagcucaGCCCGCGUgUACACCUCCa -3'
miRNA:   3'- -UGGa---AGG---------UGGGUGCAgGUGUGGGGGg -5'
2723 5' -59.8 NC_001491.2 + 80088 0.67 0.693375
Target:  5'- gGCCaucUCCACCCAaggaauggcggcguaGUCCAC-CCCaUCCa -3'
miRNA:   3'- -UGGa--AGGUGGGUg--------------CAGGUGuGGG-GGG- -5'
2723 5' -59.8 NC_001491.2 + 83262 0.66 0.768373
Target:  5'- aGCCUcCCGCCaaccaGCGaugcguuuUCCAguCUCCCCg -3'
miRNA:   3'- -UGGAaGGUGGg----UGC--------AGGUguGGGGGG- -5'
2723 5' -59.8 NC_001491.2 + 85721 0.67 0.720511
Target:  5'- gGCCUgcgCCGCCaCACGUCuCugGgggugucUCCUCCg -3'
miRNA:   3'- -UGGAa--GGUGG-GUGCAG-GugU-------GGGGGG- -5'
2723 5' -59.8 NC_001491.2 + 96558 0.7 0.516055
Target:  5'- aAUCUUCCGa-CAUGUCCAgcccggACCCCCCg -3'
miRNA:   3'- -UGGAAGGUggGUGCAGGUg-----UGGGGGG- -5'
2723 5' -59.8 NC_001491.2 + 96838 0.69 0.573938
Target:  5'- uCCUUCCGCaa--GUUuuuaacccgCACACCCCCCg -3'
miRNA:   3'- uGGAAGGUGggugCAG---------GUGUGGGGGG- -5'
2723 5' -59.8 NC_001491.2 + 97882 0.7 0.516055
Target:  5'- aACCUUaacuCCCAuuCGUUUACAUCCCCCu -3'
miRNA:   3'- -UGGAAggu-GGGU--GCAGGUGUGGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.