Results 1 - 20 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2723 | 5' | -59.8 | NC_001491.2 | + | 142951 | 1.1 | 0.001254 |
Target: 5'- cACCUUCCACCCACGUCCACACCCCCCc -3' miRNA: 3'- -UGGAAGGUGGGUGCAGGUGUGGGGGG- -5' |
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2723 | 5' | -59.8 | NC_001491.2 | + | 140422 | 0.66 | 0.747088 |
Target: 5'- cGCCagCaggcguguguguguuCCCGCGauUCCACGCCCCgCCg -3' miRNA: 3'- -UGGaaGgu-------------GGGUGC--AGGUGUGGGG-GG- -5' |
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2723 | 5' | -59.8 | NC_001491.2 | + | 117276 | 0.66 | 0.740506 |
Target: 5'- uCCUggCCGCCuCGCG-CUACGCCgaggcgcaggCCCCa -3' miRNA: 3'- uGGAa-GGUGG-GUGCaGGUGUGG----------GGGG- -5' |
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2723 | 5' | -59.8 | NC_001491.2 | + | 125312 | 0.67 | 0.731029 |
Target: 5'- cGCCUUUaCACCCACcaCCGCcuaGCCCUgCa -3' miRNA: 3'- -UGGAAG-GUGGGUGcaGGUG---UGGGGgG- -5' |
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2723 | 5' | -59.8 | NC_001491.2 | + | 36767 | 0.67 | 0.731029 |
Target: 5'- aGCCUaucaCUACCaCAuCGgCCugaGCGCCCCCCg -3' miRNA: 3'- -UGGAa---GGUGG-GU-GCaGG---UGUGGGGGG- -5' |
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2723 | 5' | -59.8 | NC_001491.2 | + | 117391 | 0.67 | 0.731029 |
Target: 5'- -gCUUCuCACCC-CGUCCGgggACCCCUg -3' miRNA: 3'- ugGAAG-GUGGGuGCAGGUg--UGGGGGg -5' |
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2723 | 5' | -59.8 | NC_001491.2 | + | 120243 | 0.67 | 0.72243 |
Target: 5'- uACCgggcaucUCCcCCCACacagcugucucaagCCACGCCCCCUc -3' miRNA: 3'- -UGGa------AGGuGGGUGca------------GGUGUGGGGGG- -5' |
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2723 | 5' | -59.8 | NC_001491.2 | + | 85721 | 0.67 | 0.720511 |
Target: 5'- gGCCUgcgCCGCCaCACGUCuCugGgggugucUCCUCCg -3' miRNA: 3'- -UGGAa--GGUGG-GUGCAG-GugU-------GGGGGG- -5' |
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2723 | 5' | -59.8 | NC_001491.2 | + | 145014 | 0.67 | 0.711841 |
Target: 5'- gACCgggUCGgCCGCGUCCcCACCgCCg -3' miRNA: 3'- -UGGaa-GGUgGGUGCAGGuGUGGgGGg -5' |
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2723 | 5' | -59.8 | NC_001491.2 | + | 22648 | 0.66 | 0.749895 |
Target: 5'- aACCagCgCACCCcauuuuCGggUACGCCCCCCg -3' miRNA: 3'- -UGGaaG-GUGGGu-----GCagGUGUGGGGGG- -5' |
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2723 | 5' | -59.8 | NC_001491.2 | + | 128771 | 0.66 | 0.762875 |
Target: 5'- aGCUga-CugUCACaGUCCuggaugccguucgacGCACCCCCCg -3' miRNA: 3'- -UGGaagGugGGUG-CAGG---------------UGUGGGGGG- -5' |
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2723 | 5' | -59.8 | NC_001491.2 | + | 105687 | 0.66 | 0.76746 |
Target: 5'- gACC-UCCAUCUugaucuuGCGUCUGguCCCCCUc -3' miRNA: 3'- -UGGaAGGUGGG-------UGCAGGUguGGGGGG- -5' |
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2723 | 5' | -59.8 | NC_001491.2 | + | 103865 | 0.66 | 0.786396 |
Target: 5'- cACUgcgUCUuuCCCGCGUCCugGUCCCUg -3' miRNA: 3'- -UGGa--AGGu-GGGUGCAGGugUGGGGGg -5' |
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2723 | 5' | -59.8 | NC_001491.2 | + | 147560 | 0.66 | 0.777446 |
Target: 5'- cGCCUgaaUCCGCCCcgACgGUCgGgGCCCUCg -3' miRNA: 3'- -UGGA---AGGUGGG--UG-CAGgUgUGGGGGg -5' |
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2723 | 5' | -59.8 | NC_001491.2 | + | 3145 | 0.66 | 0.777446 |
Target: 5'- uGCCcgggCCGCCCgACGUCCggagcgauucGCACCUCa- -3' miRNA: 3'- -UGGaa--GGUGGG-UGCAGG----------UGUGGGGgg -5' |
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2723 | 5' | -59.8 | NC_001491.2 | + | 102480 | 0.66 | 0.776544 |
Target: 5'- cCCUcgcagcgUCUAUCCACgGUCCcucUACUCCCCg -3' miRNA: 3'- uGGA-------AGGUGGGUG-CAGGu--GUGGGGGG- -5' |
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2723 | 5' | -59.8 | NC_001491.2 | + | 123017 | 0.66 | 0.772016 |
Target: 5'- cGCCgcggugUCCgugcuggucggguauAgCC-CGUCCGCGCCCgCCCc -3' miRNA: 3'- -UGGa-----AGG---------------UgGGuGCAGGUGUGGG-GGG- -5' |
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2723 | 5' | -59.8 | NC_001491.2 | + | 143055 | 0.66 | 0.768373 |
Target: 5'- cGCCggccCCACCCcaucgACGUaacaCgGCGCCCCUCc -3' miRNA: 3'- -UGGaa--GGUGGG-----UGCA----GgUGUGGGGGG- -5' |
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2723 | 5' | -59.8 | NC_001491.2 | + | 83262 | 0.66 | 0.768373 |
Target: 5'- aGCCUcCCGCCaaccaGCGaugcguuuUCCAguCUCCCCg -3' miRNA: 3'- -UGGAaGGUGGg----UGC--------AGGUguGGGGGG- -5' |
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2723 | 5' | -59.8 | NC_001491.2 | + | 116082 | 0.66 | 0.768373 |
Target: 5'- cCCcUCguCCCACucCCAguCCCCCCa -3' miRNA: 3'- uGGaAGguGGGUGcaGGUguGGGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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