miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27230 5' -57 NC_005832.1 + 92459 1.08 0.002132
Target:  5'- gUGGACGACGAGGACGACGAGGACCAGu -3'
miRNA:   3'- -ACCUGCUGCUCCUGCUGCUCCUGGUC- -5'
27230 5' -57 NC_005832.1 + 29902 0.81 0.141519
Target:  5'- gGGGCGGCGGGGGCGGCGguGGaGGCCAa -3'
miRNA:   3'- aCCUGCUGCUCCUGCUGC--UC-CUGGUc -5'
27230 5' -57 NC_005832.1 + 6497 0.79 0.198909
Target:  5'- cGGAUGACGAGGACGGggUGucuguggcccugugcGGGGCCAGg -3'
miRNA:   3'- aCCUGCUGCUCCUGCU--GC---------------UCCUGGUC- -5'
27230 5' -57 NC_005832.1 + 43627 0.79 0.201903
Target:  5'- cUGGAgGGCGAGGGagaaagucCGACGGGGACgAGg -3'
miRNA:   3'- -ACCUgCUGCUCCU--------GCUGCUCCUGgUC- -5'
27230 5' -57 NC_005832.1 + 4391 0.77 0.276856
Target:  5'- aGGcCcGCGAGGACG-CGAGGGCCAa -3'
miRNA:   3'- aCCuGcUGCUCCUGCuGCUCCUGGUc -5'
27230 5' -57 NC_005832.1 + 87426 0.75 0.340008
Target:  5'- gGGAUGGCGAcGGCGGCuguggccgaagugGAGGGCCAGu -3'
miRNA:   3'- aCCUGCUGCUcCUGCUG-------------CUCCUGGUC- -5'
27230 5' -57 NC_005832.1 + 48007 0.75 0.340774
Target:  5'- cGGA-GACGAGGuguuuAUGGCGGGGGCCAu -3'
miRNA:   3'- aCCUgCUGCUCC-----UGCUGCUCCUGGUc -5'
27230 5' -57 NC_005832.1 + 70522 0.75 0.356354
Target:  5'- -uGAgGACGAGGACGACaugguuGAGGuGCCAGa -3'
miRNA:   3'- acCUgCUGCUCCUGCUG------CUCC-UGGUC- -5'
27230 5' -57 NC_005832.1 + 4339 0.74 0.364329
Target:  5'- -uGACGACGAGGAgGACGA-GugCAGc -3'
miRNA:   3'- acCUGCUGCUCCUgCUGCUcCugGUC- -5'
27230 5' -57 NC_005832.1 + 87935 0.74 0.364329
Target:  5'- cGGACGGCGcGGAUGuaaaGuGGACCGGg -3'
miRNA:   3'- aCCUGCUGCuCCUGCug--CuCCUGGUC- -5'
27230 5' -57 NC_005832.1 + 66619 0.74 0.397445
Target:  5'- aGGACu-CGAGGGCcugGACGAGGGgCAGg -3'
miRNA:   3'- aCCUGcuGCUCCUG---CUGCUCCUgGUC- -5'
27230 5' -57 NC_005832.1 + 72784 0.73 0.432434
Target:  5'- gGGGCGACaAGGugGACGucGACCc- -3'
miRNA:   3'- aCCUGCUGcUCCugCUGCucCUGGuc -5'
27230 5' -57 NC_005832.1 + 63493 0.73 0.432434
Target:  5'- --aGCGuaaauCGGGGugGGCGGGGACCAa -3'
miRNA:   3'- accUGCu----GCUCCugCUGCUCCUGGUc -5'
27230 5' -57 NC_005832.1 + 5692 0.73 0.432434
Target:  5'- cUGGAaGACGGGGGaGACGGuGACCAGg -3'
miRNA:   3'- -ACCUgCUGCUCCUgCUGCUcCUGGUC- -5'
27230 5' -57 NC_005832.1 + 65612 0.73 0.441458
Target:  5'- aUGGACaccACGGGGACG-UGAGGGCCc- -3'
miRNA:   3'- -ACCUGc--UGCUCCUGCuGCUCCUGGuc -5'
27230 5' -57 NC_005832.1 + 79972 0.73 0.450588
Target:  5'- aGGugGAgGAGGGagGugGGGGACCc- -3'
miRNA:   3'- aCCugCUgCUCCUg-CugCUCCUGGuc -5'
27230 5' -57 NC_005832.1 + 91969 0.72 0.497711
Target:  5'- cGGugG-CGAGGugGGCcAGGAgCAGc -3'
miRNA:   3'- aCCugCuGCUCCugCUGcUCCUgGUC- -5'
27230 5' -57 NC_005832.1 + 91211 0.72 0.497711
Target:  5'- aGuGCGACGAGGACGAgUGcuGGACCAu -3'
miRNA:   3'- aCcUGCUGCUCCUGCU-GCu-CCUGGUc -5'
27230 5' -57 NC_005832.1 + 90371 0.72 0.505459
Target:  5'- aGGACGaguuucggcgucuGCGGGGACGAUgggcaagGAGGACguGg -3'
miRNA:   3'- aCCUGC-------------UGCUCCUGCUG-------CUCCUGguC- -5'
27230 5' -57 NC_005832.1 + 92549 0.72 0.507404
Target:  5'- aGGacGCGACGGGGACGGCucuGGGCUg- -3'
miRNA:   3'- aCC--UGCUGCUCCUGCUGcu-CCUGGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.