miRNA display CGI


Results 1 - 20 of 69 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27230 5' -57 NC_005832.1 + 1961 0.7 0.628311
Target:  5'- aGGugGAC-AGGGCGAUggGAGGGUCGGa -3'
miRNA:   3'- aCCugCUGcUCCUGCUG--CUCCUGGUC- -5'
27230 5' -57 NC_005832.1 + 2649 0.68 0.729708
Target:  5'- aGGAC-ACGAGGcCGuCGGGGGCUc- -3'
miRNA:   3'- aCCUGcUGCUCCuGCuGCUCCUGGuc -5'
27230 5' -57 NC_005832.1 + 2662 0.67 0.78705
Target:  5'- aGGAgGGCcuguGGACuauGGCGAGGACCc- -3'
miRNA:   3'- aCCUgCUGcu--CCUG---CUGCUCCUGGuc -5'
27230 5' -57 NC_005832.1 + 2722 0.68 0.709816
Target:  5'- cGGAUG-CGgaaaAGGACGucAUGAGGGCCAc -3'
miRNA:   3'- aCCUGCuGC----UCCUGC--UGCUCCUGGUc -5'
27230 5' -57 NC_005832.1 + 4339 0.74 0.364329
Target:  5'- -uGACGACGAGGAgGACGA-GugCAGc -3'
miRNA:   3'- acCUGCUGCUCCUgCUGCUcCugGUC- -5'
27230 5' -57 NC_005832.1 + 4391 0.77 0.276856
Target:  5'- aGGcCcGCGAGGACG-CGAGGGCCAa -3'
miRNA:   3'- aCCuGcUGCUCCUGCuGCUCCUGGUc -5'
27230 5' -57 NC_005832.1 + 5413 0.67 0.774987
Target:  5'- -aGACGGCacccugGAGGugGACGAGGugggggugcccgaaGCCAu -3'
miRNA:   3'- acCUGCUG------CUCCugCUGCUCC--------------UGGUc -5'
27230 5' -57 NC_005832.1 + 5692 0.73 0.432434
Target:  5'- cUGGAaGACGGGGGaGACGGuGACCAGg -3'
miRNA:   3'- -ACCUgCUGCUCCUgCUGCUcCUGGUC- -5'
27230 5' -57 NC_005832.1 + 5761 0.67 0.78705
Target:  5'- cGuGACGAgGugucuGGugGACGGGGAUCc- -3'
miRNA:   3'- aC-CUGCUgCu----CCugCUGCUCCUGGuc -5'
27230 5' -57 NC_005832.1 + 6320 0.7 0.57718
Target:  5'- gGGugGACG-GGAgGACaGAGGACa-- -3'
miRNA:   3'- aCCugCUGCuCCUgCUG-CUCCUGguc -5'
27230 5' -57 NC_005832.1 + 6497 0.79 0.198909
Target:  5'- cGGAUGACGAGGACGGggUGucuguggcccugugcGGGGCCAGg -3'
miRNA:   3'- aCCUGCUGCUCCUGCU--GC---------------UCCUGGUC- -5'
27230 5' -57 NC_005832.1 + 8126 0.67 0.774987
Target:  5'- aGGGCGGCcuucGAGGAgucccuagauauccUGACGGGaGCCGGg -3'
miRNA:   3'- aCCUGCUG----CUCCU--------------GCUGCUCcUGGUC- -5'
27230 5' -57 NC_005832.1 + 9307 0.69 0.638576
Target:  5'- cGGugGGCagGAGGuGCGugGAcugGGAUCAGa -3'
miRNA:   3'- aCCugCUG--CUCC-UGCugCU---CCUGGUC- -5'
27230 5' -57 NC_005832.1 + 10551 0.68 0.729708
Target:  5'- -aGGCGAacgucuugGGGGAUGACGAGGccacccucACCAGg -3'
miRNA:   3'- acCUGCUg-------CUCCUGCUGCUCC--------UGGUC- -5'
27230 5' -57 NC_005832.1 + 10868 0.67 0.79617
Target:  5'- cGGccuGgGACcAGGACGcCGGGGACCGc -3'
miRNA:   3'- aCC---UgCUGcUCCUGCuGCUCCUGGUc -5'
27230 5' -57 NC_005832.1 + 19956 0.68 0.709816
Target:  5'- gUGGGCGugGAuGGACu-UGAGGAUCu- -3'
miRNA:   3'- -ACCUGCugCU-CCUGcuGCUCCUGGuc -5'
27230 5' -57 NC_005832.1 + 26491 0.7 0.581246
Target:  5'- cUGGAgacUGACGGGGGCacggucaucguccccGGCGAGGccACCGGg -3'
miRNA:   3'- -ACCU---GCUGCUCCUG---------------CUGCUCC--UGGUC- -5'
27230 5' -57 NC_005832.1 + 27599 0.67 0.7684
Target:  5'- gUGGACGAUGAGuacuccauaGACGGCcuGGGGgCAGu -3'
miRNA:   3'- -ACCUGCUGCUC---------CUGCUGc-UCCUgGUC- -5'
27230 5' -57 NC_005832.1 + 29902 0.81 0.141519
Target:  5'- gGGGCGGCGGGGGCGGCGguGGaGGCCAa -3'
miRNA:   3'- aCCUGCUGCUCCUGCUGC--UC-CUGGUc -5'
27230 5' -57 NC_005832.1 + 32166 0.68 0.728721
Target:  5'- aGGAgCGGCGAGGggaguccACGGCauGGGGuCCGGa -3'
miRNA:   3'- aCCU-GCUGCUCC-------UGCUG--CUCCuGGUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.