miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27230 5' -57 NC_005832.1 + 32166 0.68 0.728721
Target:  5'- aGGAgCGGCGAGGggaguccACGGCauGGGGuCCGGa -3'
miRNA:   3'- aCCU-GCUGCUCC-------UGCUG--CUCCuGGUC- -5'
27230 5' -57 NC_005832.1 + 54718 0.7 0.618048
Target:  5'- gUGGG-GACGGGGuuCGACGccugcgagAGGACCGGc -3'
miRNA:   3'- -ACCUgCUGCUCCu-GCUGC--------UCCUGGUC- -5'
27230 5' -57 NC_005832.1 + 1961 0.7 0.628311
Target:  5'- aGGugGAC-AGGGCGAUggGAGGGUCGGa -3'
miRNA:   3'- aCCugCUGcUCCUGCUG--CUCCUGGUC- -5'
27230 5' -57 NC_005832.1 + 36058 0.7 0.628311
Target:  5'- gGGugGGCcGGGugGACGcuccuGGGCUGGa -3'
miRNA:   3'- aCCugCUGcUCCugCUGCu----CCUGGUC- -5'
27230 5' -57 NC_005832.1 + 63244 0.69 0.659083
Target:  5'- aGGAgGAgGAGGAgGAgGcGGAUCAGu -3'
miRNA:   3'- aCCUgCUgCUCCUgCUgCuCCUGGUC- -5'
27230 5' -57 NC_005832.1 + 75116 0.68 0.699766
Target:  5'- cGGGCcACuGGGACGACGugagGGGAcCCAGc -3'
miRNA:   3'- aCCUGcUGcUCCUGCUGC----UCCU-GGUC- -5'
27230 5' -57 NC_005832.1 + 96594 0.68 0.703793
Target:  5'- gGGAUGACGcagucaggguaaagaGGGAgGugGAGaGcACCAGg -3'
miRNA:   3'- aCCUGCUGC---------------UCCUgCugCUC-C-UGGUC- -5'
27230 5' -57 NC_005832.1 + 2722 0.68 0.709816
Target:  5'- cGGAUG-CGgaaaAGGACGucAUGAGGGCCAc -3'
miRNA:   3'- aCCUGCuGC----UCCUGC--UGCUCCUGGUc -5'
27230 5' -57 NC_005832.1 + 39332 0.68 0.7198
Target:  5'- -uGACccccccCGGGGACGACGGcGACCAGg -3'
miRNA:   3'- acCUGcu----GCUCCUGCUGCUcCUGGUC- -5'
27230 5' -57 NC_005832.1 + 62100 0.7 0.57718
Target:  5'- aGGACGGgGAuGGAC-ACG-GGGCCGGu -3'
miRNA:   3'- aCCUGCUgCU-CCUGcUGCuCCUGGUC- -5'
27230 5' -57 NC_005832.1 + 65687 0.71 0.536938
Target:  5'- cGGGCG-CGGGGACGuccACGgAGGAcaaCCAGa -3'
miRNA:   3'- aCCUGCuGCUCCUGC---UGC-UCCU---GGUC- -5'
27230 5' -57 NC_005832.1 + 66830 0.71 0.536938
Target:  5'- gUGGGCuGuggugaccuACGGGGACucuACGAGGGCCGGa -3'
miRNA:   3'- -ACCUG-C---------UGCUCCUGc--UGCUCCUGGUC- -5'
27230 5' -57 NC_005832.1 + 6497 0.79 0.198909
Target:  5'- cGGAUGACGAGGACGGggUGucuguggcccugugcGGGGCCAGg -3'
miRNA:   3'- aCCUGCUGCUCCUGCU--GC---------------UCCUGGUC- -5'
27230 5' -57 NC_005832.1 + 70522 0.75 0.356354
Target:  5'- -uGAgGACGAGGACGACaugguuGAGGuGCCAGa -3'
miRNA:   3'- acCUgCUGCUCCUGCUG------CUCC-UGGUC- -5'
27230 5' -57 NC_005832.1 + 87935 0.74 0.364329
Target:  5'- cGGACGGCGcGGAUGuaaaGuGGACCGGg -3'
miRNA:   3'- aCCUGCUGCuCCUGCug--CuCCUGGUC- -5'
27230 5' -57 NC_005832.1 + 66619 0.74 0.397445
Target:  5'- aGGACu-CGAGGGCcugGACGAGGGgCAGg -3'
miRNA:   3'- aCCUGcuGCUCCUG---CUGCUCCUgGUC- -5'
27230 5' -57 NC_005832.1 + 63493 0.73 0.432434
Target:  5'- --aGCGuaaauCGGGGugGGCGGGGACCAa -3'
miRNA:   3'- accUGCu----GCUCCugCUGCUCCUGGUc -5'
27230 5' -57 NC_005832.1 + 72784 0.73 0.432434
Target:  5'- gGGGCGACaAGGugGACGucGACCc- -3'
miRNA:   3'- aCCUGCUGcUCCugCUGCucCUGGuc -5'
27230 5' -57 NC_005832.1 + 5692 0.73 0.432434
Target:  5'- cUGGAaGACGGGGGaGACGGuGACCAGg -3'
miRNA:   3'- -ACCUgCUGCUCCUgCUGCUcCUGGUC- -5'
27230 5' -57 NC_005832.1 + 79972 0.73 0.450588
Target:  5'- aGGugGAgGAGGGagGugGGGGACCc- -3'
miRNA:   3'- aCCugCUgCUCCUg-CugCUCCUGGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.