Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27231 | 5' | -54.3 | NC_005832.1 | + | 54737 | 0.66 | 0.9057 |
Target: 5'- cUAGAGGacagcgucucggcuaUCCUCuugACGUGGUCCACCc- -3' miRNA: 3'- uGUUUCC---------------AGGAG---UGCGUCAGGUGGug -5' |
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27231 | 5' | -54.3 | NC_005832.1 | + | 746 | 0.66 | 0.899103 |
Target: 5'- -aGAGGGUCCUUACcCuuggaagaguaccugAGUCCGCaCACu -3' miRNA: 3'- ugUUUCCAGGAGUGcG---------------UCAGGUG-GUG- -5' |
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27231 | 5' | -54.3 | NC_005832.1 | + | 52463 | 0.66 | 0.889443 |
Target: 5'- -uGAGGGUUCUCACGU---CgGCCGCa -3' miRNA: 3'- ugUUUCCAGGAGUGCGucaGgUGGUG- -5' |
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27231 | 5' | -54.3 | NC_005832.1 | + | 72734 | 0.67 | 0.867132 |
Target: 5'- ----cGGaccCUUCACGCcGUCCACUACg -3' miRNA: 3'- uguuuCCa--GGAGUGCGuCAGGUGGUG- -5' |
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27231 | 5' | -54.3 | NC_005832.1 | + | 5345 | 0.67 | 0.859226 |
Target: 5'- -gGAGGGcUCCUCAgGCAGaaCAUCAUg -3' miRNA: 3'- ugUUUCC-AGGAGUgCGUCagGUGGUG- -5' |
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27231 | 5' | -54.3 | NC_005832.1 | + | 66434 | 0.67 | 0.851096 |
Target: 5'- uGCcGAGGUCCUCaACGUuaagaAGagUACCGCg -3' miRNA: 3'- -UGuUUCCAGGAG-UGCG-----UCagGUGGUG- -5' |
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27231 | 5' | -54.3 | NC_005832.1 | + | 75256 | 0.67 | 0.842749 |
Target: 5'- uGCGcuGGGUCCccUCACGUcgucccaguGGcCCGCCACu -3' miRNA: 3'- -UGUu-UCCAGG--AGUGCG---------UCaGGUGGUG- -5' |
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27231 | 5' | -54.3 | NC_005832.1 | + | 54863 | 0.67 | 0.841903 |
Target: 5'- cACAGGccGGUCCUCuCGCAggcgucgaaccccGUCC-CCACc -3' miRNA: 3'- -UGUUU--CCAGGAGuGCGU-------------CAGGuGGUG- -5' |
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27231 | 5' | -54.3 | NC_005832.1 | + | 7368 | 0.67 | 0.834194 |
Target: 5'- gGCAAAguGGUCCUCGCaCGGguguUCCuCCGCu -3' miRNA: 3'- -UGUUU--CCAGGAGUGcGUC----AGGuGGUG- -5' |
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27231 | 5' | -54.3 | NC_005832.1 | + | 52056 | 0.68 | 0.816491 |
Target: 5'- uGCGAuGGcCCUCAgccucUGCAcugcGUCCACCAUg -3' miRNA: 3'- -UGUUuCCaGGAGU-----GCGU----CAGGUGGUG- -5' |
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27231 | 5' | -54.3 | NC_005832.1 | + | 2800 | 0.68 | 0.798058 |
Target: 5'- gAC-AGGGUCCUCGCcaUAGUCCACa-- -3' miRNA: 3'- -UGuUUCCAGGAGUGc-GUCAGGUGgug -5' |
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27231 | 5' | -54.3 | NC_005832.1 | + | 27992 | 0.69 | 0.769207 |
Target: 5'- uCGGAGG-CUUCACGguGUCCGgaGCa -3' miRNA: 3'- uGUUUCCaGGAGUGCguCAGGUggUG- -5' |
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27231 | 5' | -54.3 | NC_005832.1 | + | 61500 | 0.69 | 0.769207 |
Target: 5'- aGC-AGGGUCCUCACaGCAcUCCGCa-- -3' miRNA: 3'- -UGuUUCCAGGAGUG-CGUcAGGUGgug -5' |
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27231 | 5' | -54.3 | NC_005832.1 | + | 44184 | 0.69 | 0.74929 |
Target: 5'- gACGAGGGcCCcCGCGCacaacgGGUCUAUCACc -3' miRNA: 3'- -UGUUUCCaGGaGUGCG------UCAGGUGGUG- -5' |
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27231 | 5' | -54.3 | NC_005832.1 | + | 10183 | 0.69 | 0.728924 |
Target: 5'- -gAGAGGaUCCUCAUGacuUCCGCCGCc -3' miRNA: 3'- ugUUUCC-AGGAGUGCgucAGGUGGUG- -5' |
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27231 | 5' | -54.3 | NC_005832.1 | + | 94901 | 0.69 | 0.718599 |
Target: 5'- cGCGucGGcCCUCGCGCAGaUCCuCCu- -3' miRNA: 3'- -UGUuuCCaGGAGUGCGUC-AGGuGGug -5' |
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27231 | 5' | -54.3 | NC_005832.1 | + | 103472 | 0.7 | 0.708193 |
Target: 5'- gGCGGAGGUCCU--CGgGGUCCaggACUACg -3' miRNA: 3'- -UGUUUCCAGGAguGCgUCAGG---UGGUG- -5' |
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27231 | 5' | -54.3 | NC_005832.1 | + | 36385 | 0.7 | 0.707148 |
Target: 5'- cGCGAGGGUCCUCuccaaguACGgccucaaGGUCCGCgACc -3' miRNA: 3'- -UGUUUCCAGGAG-------UGCg------UCAGGUGgUG- -5' |
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27231 | 5' | -54.3 | NC_005832.1 | + | 71408 | 0.7 | 0.695614 |
Target: 5'- uGCuuGGGUCCaccgacauuggcCACGCAGacaCCGCCGCg -3' miRNA: 3'- -UGuuUCCAGGa-----------GUGCGUCa--GGUGGUG- -5' |
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27231 | 5' | -54.3 | NC_005832.1 | + | 52550 | 0.7 | 0.687181 |
Target: 5'- uGCcGGGGaUCCUggcCAUGCccaAGUCCACCACc -3' miRNA: 3'- -UGuUUCC-AGGA---GUGCG---UCAGGUGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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