miRNA display CGI


Results 21 - 40 of 85 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27233 5' -49 NC_005832.1 + 47707 0.7 0.934515
Target:  5'- -gGCCgcgagGCcGGCCAAGGAGAG-GAUCa -3'
miRNA:   3'- gaCGGa----UGaCCGGUUUUUCUUgCUGG- -5'
27233 5' -49 NC_005832.1 + 52073 0.7 0.938706
Target:  5'- uCUGCaCUGCguccaccaugucGGCCuuGGAGAugGACUu -3'
miRNA:   3'- -GACG-GAUGa-----------CCGGuuUUUCUugCUGG- -5'
27233 5' -49 NC_005832.1 + 32594 0.7 0.944662
Target:  5'- gCUGCCg--UGGCCGAcuuu-GCGGCCa -3'
miRNA:   3'- -GACGGaugACCGGUUuuucuUGCUGG- -5'
27233 5' -49 NC_005832.1 + 96663 0.7 0.944662
Target:  5'- cCUGCUguguccaggGCuUGGCCGAGGAGGcCGGCa -3'
miRNA:   3'- -GACGGa--------UG-ACCGGUUUUUCUuGCUGg -5'
27233 5' -49 NC_005832.1 + 91440 0.7 0.949326
Target:  5'- -gGCCgucaUGGCCAAGcuGGACGugGCCa -3'
miRNA:   3'- gaCGGaug-ACCGGUUUuuCUUGC--UGG- -5'
27233 5' -49 NC_005832.1 + 26334 0.7 0.949326
Target:  5'- uCUGCCcGgUGGCCucgccGGGGACGAUg -3'
miRNA:   3'- -GACGGaUgACCGGuuu--UUCUUGCUGg -5'
27233 5' -49 NC_005832.1 + 74329 0.7 0.949326
Target:  5'- -aGCCUcgUGGCCAGccucuuGCGACCg -3'
miRNA:   3'- gaCGGAugACCGGUUuuucu-UGCUGG- -5'
27233 5' -49 NC_005832.1 + 80183 0.7 0.953293
Target:  5'- -cGCCUccauccgACUGGaCCAGgggacccguGAGGAACGGCa -3'
miRNA:   3'- gaCGGA-------UGACC-GGUU---------UUUCUUGCUGg -5'
27233 5' -49 NC_005832.1 + 13904 0.7 0.953721
Target:  5'- gCUGCCUACccugguacucgaUGGCCGucuuGAGgGACUu -3'
miRNA:   3'- -GACGGAUG------------ACCGGUuuuuCUUgCUGG- -5'
27233 5' -49 NC_005832.1 + 47491 0.69 0.957851
Target:  5'- -gGCCUAC--GCCAcgaGAAAGAugGACg -3'
miRNA:   3'- gaCGGAUGacCGGU---UUUUCUugCUGg -5'
27233 5' -49 NC_005832.1 + 41747 0.69 0.961721
Target:  5'- -gGCCaUGgUGGCCAGGGAGAA--ACCc -3'
miRNA:   3'- gaCGG-AUgACCGGUUUUUCUUgcUGG- -5'
27233 5' -49 NC_005832.1 + 79000 0.69 0.961721
Target:  5'- uCUGCCaccCUGGCCGcAAAguccuccgguGGAACGugCc -3'
miRNA:   3'- -GACGGau-GACCGGU-UUU----------UCUUGCugG- -5'
27233 5' -49 NC_005832.1 + 89420 0.69 0.961721
Target:  5'- gUGCCUGgaGGCUAuacuGGGGAAaaaGACUg -3'
miRNA:   3'- gACGGAUgaCCGGUu---UUUCUUg--CUGG- -5'
27233 5' -49 NC_005832.1 + 17596 0.69 0.961721
Target:  5'- gCUGCCgucuCUGGCCGccAAGAuguCGGgCa -3'
miRNA:   3'- -GACGGau--GACCGGUuuUUCUu--GCUgG- -5'
27233 5' -49 NC_005832.1 + 33719 0.69 0.961721
Target:  5'- aUGCUgGC-GGCCAAAGgcAGGGCGuCCa -3'
miRNA:   3'- gACGGaUGaCCGGUUUU--UCUUGCuGG- -5'
27233 5' -49 NC_005832.1 + 75920 0.69 0.968382
Target:  5'- -gGCC--CUGGCCAAGGAGAGgGgagaggcACCg -3'
miRNA:   3'- gaCGGauGACCGGUUUUUCUUgC-------UGG- -5'
27233 5' -49 NC_005832.1 + 95955 0.69 0.968708
Target:  5'- gCUGCg-GC-GGUC-AAGGGAGCGGCCg -3'
miRNA:   3'- -GACGgaUGaCCGGuUUUUCUUGCUGG- -5'
27233 5' -49 NC_005832.1 + 40846 0.69 0.968708
Target:  5'- cCUGCCgUAgaGGCCcGGGGGcaucuuuACGGCCa -3'
miRNA:   3'- -GACGG-AUgaCCGGuUUUUCu------UGCUGG- -5'
27233 5' -49 NC_005832.1 + 56402 0.68 0.970923
Target:  5'- cCU-CCUGCcGGCCAGGAaccccacucccacgGGAGCGcCCa -3'
miRNA:   3'- -GAcGGAUGaCCGGUUUU--------------UCUUGCuGG- -5'
27233 5' -49 NC_005832.1 + 67949 0.68 0.971838
Target:  5'- -gGCCagagUACgGGCa--GAGGAGCGACCc -3'
miRNA:   3'- gaCGG----AUGaCCGguuUUUCUUGCUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.