miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27233 5' -49 NC_005832.1 + 97232 1.13 0.004881
Target:  5'- cCUGCCUACUGGCCAAAAAGAACGACCu -3'
miRNA:   3'- -GACGGAUGACCGGUUUUUCUUGCUGG- -5'
27233 5' -49 NC_005832.1 + 79867 0.84 0.306564
Target:  5'- aCUGCCgaggaGCaGGCCGAGGAGAggGCGGCCa -3'
miRNA:   3'- -GACGGa----UGaCCGGUUUUUCU--UGCUGG- -5'
27233 5' -49 NC_005832.1 + 50353 0.8 0.496859
Target:  5'- gUGCUgggACgaagUGGCCAAAAAGGACGACa -3'
miRNA:   3'- gACGGa--UG----ACCGGUUUUUCUUGCUGg -5'
27233 5' -49 NC_005832.1 + 96766 0.77 0.636153
Target:  5'- -cGUCagggagaUGCUGGCCAAGGuGGACGGCCu -3'
miRNA:   3'- gaCGG-------AUGACCGGUUUUuCUUGCUGG- -5'
27233 5' -49 NC_005832.1 + 71269 0.76 0.7137
Target:  5'- gUGUCUGCgUGGCCAAugucGGugGACCc -3'
miRNA:   3'- gACGGAUG-ACCGGUUuuu-CUugCUGG- -5'
27233 5' -49 NC_005832.1 + 7556 0.75 0.734983
Target:  5'- cCUGgaCCUGCUGGCCGuc-AGAcccagcACGGCCa -3'
miRNA:   3'- -GAC--GGAUGACCGGUuuuUCU------UGCUGG- -5'
27233 5' -49 NC_005832.1 + 6934 0.75 0.745475
Target:  5'- uCUGCCUACgacGGCaCAGuGAGGGACG-CCa -3'
miRNA:   3'- -GACGGAUGa--CCG-GUU-UUUCUUGCuGG- -5'
27233 5' -49 NC_005832.1 + 15178 0.74 0.805608
Target:  5'- -cGCCUGcCUGGCCGgAGGAGAcaACG-CCu -3'
miRNA:   3'- gaCGGAU-GACCGGU-UUUUCU--UGCuGG- -5'
27233 5' -49 NC_005832.1 + 78206 0.74 0.805608
Target:  5'- uCUGCUagg-GGCCGuagaggGAAAGGACGACCu -3'
miRNA:   3'- -GACGGaugaCCGGU------UUUUCUUGCUGG- -5'
27233 5' -49 NC_005832.1 + 47312 0.73 0.824311
Target:  5'- -aGUCUACU-GCCAcugugAAAAGAACGGCUa -3'
miRNA:   3'- gaCGGAUGAcCGGU-----UUUUCUUGCUGG- -5'
27233 5' -49 NC_005832.1 + 37186 0.73 0.832468
Target:  5'- uCUGCCguucUUGGCCAggcacagGAAAGAGCcGCCa -3'
miRNA:   3'- -GACGGau--GACCGGU-------UUUUCUUGcUGG- -5'
27233 5' -49 NC_005832.1 + 75199 0.73 0.833363
Target:  5'- uCUGCCUACUGGCagggcaagguCAGGAGGGgauccuACG-CCg -3'
miRNA:   3'- -GACGGAUGACCG----------GUUUUUCU------UGCuGG- -5'
27233 5' -49 NC_005832.1 + 43146 0.73 0.850822
Target:  5'- -gGCCgUGCUGGCCAccgucaggcuggGAAAGGGCcuGCCg -3'
miRNA:   3'- gaCGG-AUGACCGGU------------UUUUCUUGc-UGG- -5'
27233 5' -49 NC_005832.1 + 46255 0.73 0.859211
Target:  5'- gUGuCCUGaUGGCCAGGAGGGACaacucuGGCCu -3'
miRNA:   3'- gAC-GGAUgACCGGUUUUUCUUG------CUGG- -5'
27233 5' -49 NC_005832.1 + 11516 0.72 0.890315
Target:  5'- gCUGCauagucCUGGCC-AGGGGAGCGGCg -3'
miRNA:   3'- -GACGgau---GACCGGuUUUUCUUGCUGg -5'
27233 5' -49 NC_005832.1 + 102465 0.72 0.896745
Target:  5'- uUGCgcaUGCUGGCCAGGuauucuuuaaucuGAGcGGCGGCCu -3'
miRNA:   3'- gACGg--AUGACCGGUUU-------------UUC-UUGCUGG- -5'
27233 5' -49 NC_005832.1 + 52223 0.71 0.910903
Target:  5'- uUGCC-AC-GGCCAGGAGccACGACCc -3'
miRNA:   3'- gACGGaUGaCCGGUUUUUcuUGCUGG- -5'
27233 5' -49 NC_005832.1 + 9632 0.71 0.917221
Target:  5'- -gGCCUGCguucaGGCCAGGGccGACGGCa -3'
miRNA:   3'- gaCGGAUGa----CCGGUUUUucUUGCUGg -5'
27233 5' -49 NC_005832.1 + 96162 0.71 0.917221
Target:  5'- uUGCCaccagGgUGGCCGucAAGAGCG-CCa -3'
miRNA:   3'- gACGGa----UgACCGGUuuUUCUUGCuGG- -5'
27233 5' -49 NC_005832.1 + 91301 0.71 0.929028
Target:  5'- uCUGCCUGgccacguccagcUUGGCCAu----GACGGCCg -3'
miRNA:   3'- -GACGGAU------------GACCGGUuuuucUUGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.