miRNA display CGI


Results 1 - 20 of 85 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27233 5' -49 NC_005832.1 + 67949 0.68 0.971838
Target:  5'- -gGCCagagUACgGGCa--GAGGAGCGACCc -3'
miRNA:   3'- gaCGG----AUGaCCGguuUUUCUUGCUGG- -5'
27233 5' -49 NC_005832.1 + 52073 0.7 0.938706
Target:  5'- uCUGCaCUGCguccaccaugucGGCCuuGGAGAugGACUu -3'
miRNA:   3'- -GACG-GAUGa-----------CCGGuuUUUCUugCUGG- -5'
27233 5' -49 NC_005832.1 + 96663 0.7 0.944662
Target:  5'- cCUGCUguguccaggGCuUGGCCGAGGAGGcCGGCa -3'
miRNA:   3'- -GACGGa--------UG-ACCGGUUUUUCUuGCUGg -5'
27233 5' -49 NC_005832.1 + 26334 0.7 0.949326
Target:  5'- uCUGCCcGgUGGCCucgccGGGGACGAUg -3'
miRNA:   3'- -GACGGaUgACCGGuuu--UUCUUGCUGg -5'
27233 5' -49 NC_005832.1 + 80183 0.7 0.953293
Target:  5'- -cGCCUccauccgACUGGaCCAGgggacccguGAGGAACGGCa -3'
miRNA:   3'- gaCGGA-------UGACC-GGUU---------UUUCUUGCUGg -5'
27233 5' -49 NC_005832.1 + 41747 0.69 0.961721
Target:  5'- -gGCCaUGgUGGCCAGGGAGAA--ACCc -3'
miRNA:   3'- gaCGG-AUgACCGGUUUUUCUUgcUGG- -5'
27233 5' -49 NC_005832.1 + 75920 0.69 0.968382
Target:  5'- -gGCC--CUGGCCAAGGAGAGgGgagaggcACCg -3'
miRNA:   3'- gaCGGauGACCGGUUUUUCUUgC-------UGG- -5'
27233 5' -49 NC_005832.1 + 40846 0.69 0.968708
Target:  5'- cCUGCCgUAgaGGCCcGGGGGcaucuuuACGGCCa -3'
miRNA:   3'- -GACGG-AUgaCCGGuUUUUCu------UGCUGG- -5'
27233 5' -49 NC_005832.1 + 56402 0.68 0.970923
Target:  5'- cCU-CCUGCcGGCCAGGAaccccacucccacgGGAGCGcCCa -3'
miRNA:   3'- -GAcGGAUGaCCGGUUUU--------------UCUUGCuGG- -5'
27233 5' -49 NC_005832.1 + 91301 0.71 0.929028
Target:  5'- uCUGCCUGgccacguccagcUUGGCCAu----GACGGCCg -3'
miRNA:   3'- -GACGGAU------------GACCGGUuuuucUUGCUGG- -5'
27233 5' -49 NC_005832.1 + 96162 0.71 0.917221
Target:  5'- uUGCCaccagGgUGGCCGucAAGAGCG-CCa -3'
miRNA:   3'- gACGGa----UgACCGGUuuUUCUUGCuGG- -5'
27233 5' -49 NC_005832.1 + 52223 0.71 0.910903
Target:  5'- uUGCC-AC-GGCCAGGAGccACGACCc -3'
miRNA:   3'- gACGGaUGaCCGGUUUUUcuUGCUGG- -5'
27233 5' -49 NC_005832.1 + 79867 0.84 0.306564
Target:  5'- aCUGCCgaggaGCaGGCCGAGGAGAggGCGGCCa -3'
miRNA:   3'- -GACGGa----UGaCCGGUUUUUCU--UGCUGG- -5'
27233 5' -49 NC_005832.1 + 96766 0.77 0.636153
Target:  5'- -cGUCagggagaUGCUGGCCAAGGuGGACGGCCu -3'
miRNA:   3'- gaCGG-------AUGACCGGUUUUuCUUGCUGG- -5'
27233 5' -49 NC_005832.1 + 71269 0.76 0.7137
Target:  5'- gUGUCUGCgUGGCCAAugucGGugGACCc -3'
miRNA:   3'- gACGGAUG-ACCGGUUuuu-CUugCUGG- -5'
27233 5' -49 NC_005832.1 + 7556 0.75 0.734983
Target:  5'- cCUGgaCCUGCUGGCCGuc-AGAcccagcACGGCCa -3'
miRNA:   3'- -GAC--GGAUGACCGGUuuuUCU------UGCUGG- -5'
27233 5' -49 NC_005832.1 + 6934 0.75 0.745475
Target:  5'- uCUGCCUACgacGGCaCAGuGAGGGACG-CCa -3'
miRNA:   3'- -GACGGAUGa--CCG-GUU-UUUCUUGCuGG- -5'
27233 5' -49 NC_005832.1 + 78206 0.74 0.805608
Target:  5'- uCUGCUagg-GGCCGuagaggGAAAGGACGACCu -3'
miRNA:   3'- -GACGGaugaCCGGU------UUUUCUUGCUGG- -5'
27233 5' -49 NC_005832.1 + 75199 0.73 0.833363
Target:  5'- uCUGCCUACUGGCagggcaagguCAGGAGGGgauccuACG-CCg -3'
miRNA:   3'- -GACGGAUGACCG----------GUUUUUCU------UGCuGG- -5'
27233 5' -49 NC_005832.1 + 43146 0.73 0.850822
Target:  5'- -gGCCgUGCUGGCCAccgucaggcuggGAAAGGGCcuGCCg -3'
miRNA:   3'- gaCGG-AUGACCGGU------------UUUUCUUGc-UGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.