miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27233 5' -49 NC_005832.1 + 649 0.68 0.97741
Target:  5'- -cGCCggggGCUGGUgCAGAAAGugguacuCGGCCc -3'
miRNA:   3'- gaCGGa---UGACCG-GUUUUUCuu-----GCUGG- -5'
27233 5' -49 NC_005832.1 + 1112 0.67 0.989146
Target:  5'- -gGCCUGgUGGCCcAGccggcgucccgcGAGGAcaggucgGCGGCCu -3'
miRNA:   3'- gaCGGAUgACCGG-UU------------UUUCU-------UGCUGG- -5'
27233 5' -49 NC_005832.1 + 6934 0.75 0.745475
Target:  5'- uCUGCCUACgacGGCaCAGuGAGGGACG-CCa -3'
miRNA:   3'- -GACGGAUGa--CCG-GUU-UUUCUUGCuGG- -5'
27233 5' -49 NC_005832.1 + 7556 0.75 0.734983
Target:  5'- cCUGgaCCUGCUGGCCGuc-AGAcccagcACGGCCa -3'
miRNA:   3'- -GAC--GGAUGACCGGUuuuUCU------UGCUGG- -5'
27233 5' -49 NC_005832.1 + 9632 0.71 0.917221
Target:  5'- -gGCCUGCguucaGGCCAGGGccGACGGCa -3'
miRNA:   3'- gaCGGAUGa----CCGGUUUUucUUGCUGg -5'
27233 5' -49 NC_005832.1 + 10879 0.68 0.982125
Target:  5'- -cGCCUACgccucGGCCuGGGAccAGGACG-CCg -3'
miRNA:   3'- gaCGGAUGa----CCGG-UUUU--UCUUGCuGG- -5'
27233 5' -49 NC_005832.1 + 11036 0.66 0.995174
Target:  5'- -aGCCcgacgaGCUGGCCGAGAGGGucagggggagggugaGCuACCu -3'
miRNA:   3'- gaCGGa-----UGACCGGUUUUUCU---------------UGcUGG- -5'
27233 5' -49 NC_005832.1 + 11516 0.72 0.890315
Target:  5'- gCUGCauagucCUGGCC-AGGGGAGCGGCg -3'
miRNA:   3'- -GACGgau---GACCGGuUUUUCUUGCUGg -5'
27233 5' -49 NC_005832.1 + 11539 0.68 0.97987
Target:  5'- -aGCuuCUGgUGGCCAAAGGcggggucguccuGGACGGCCc -3'
miRNA:   3'- gaCG--GAUgACCGGUUUUU------------CUUGCUGG- -5'
27233 5' -49 NC_005832.1 + 11694 0.67 0.984184
Target:  5'- -cGCCaUGaggagGGCCGuccAGGACGACCc -3'
miRNA:   3'- gaCGG-AUga---CCGGUuuuUCUUGCUGG- -5'
27233 5' -49 NC_005832.1 + 13904 0.7 0.953721
Target:  5'- gCUGCCUACccugguacucgaUGGCCGucuuGAGgGACUu -3'
miRNA:   3'- -GACGGAUG------------ACCGGUuuuuCUUgCUGG- -5'
27233 5' -49 NC_005832.1 + 15178 0.74 0.805608
Target:  5'- -cGCCUGcCUGGCCGgAGGAGAcaACG-CCu -3'
miRNA:   3'- gaCGGAU-GACCGGU-UUUUCU--UGCuGG- -5'
27233 5' -49 NC_005832.1 + 17596 0.69 0.961721
Target:  5'- gCUGCCgucuCUGGCCGccAAGAuguCGGgCa -3'
miRNA:   3'- -GACGGau--GACCGGUuuUUCUu--GCUgG- -5'
27233 5' -49 NC_005832.1 + 20216 0.67 0.984184
Target:  5'- uCUGCCgccaUGuCCAGGAaaGGGugGACCa -3'
miRNA:   3'- -GACGGaug-ACcGGUUUU--UCUugCUGG- -5'
27233 5' -49 NC_005832.1 + 26334 0.7 0.949326
Target:  5'- uCUGCCcGgUGGCCucgccGGGGACGAUg -3'
miRNA:   3'- -GACGGaUgACCGGuuu--UUCUUGCUGg -5'
27233 5' -49 NC_005832.1 + 27548 0.66 0.99435
Target:  5'- -aGCCUGCUcgaagacaccuucgaGGCCuuccuGGGAgcggugugcACGGCCg -3'
miRNA:   3'- gaCGGAUGA---------------CCGGuuu--UUCU---------UGCUGG- -5'
27233 5' -49 NC_005832.1 + 32102 0.66 0.995619
Target:  5'- aCUGCCUguGCggGGCCuGAAAGGccucgcgguggGCGcCCc -3'
miRNA:   3'- -GACGGA--UGa-CCGGuUUUUCU-----------UGCuGG- -5'
27233 5' -49 NC_005832.1 + 32566 0.68 0.971838
Target:  5'- aCUGCCUcCUcgcGGCCucu-GGAGCGGuCCc -3'
miRNA:   3'- -GACGGAuGA---CCGGuuuuUCUUGCU-GG- -5'
27233 5' -49 NC_005832.1 + 32594 0.7 0.944662
Target:  5'- gCUGCCg--UGGCCGAcuuu-GCGGCCa -3'
miRNA:   3'- -GACGGaugACCGGUUuuucuUGCUGG- -5'
27233 5' -49 NC_005832.1 + 32814 0.68 0.971838
Target:  5'- gUGCCUGgucucgGGCCuGAAgggaaggacguuGGGACGGCCu -3'
miRNA:   3'- gACGGAUga----CCGGuUUU------------UCUUGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.