Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27235 | 3' | -51.8 | NC_005832.1 | + | 97982 | 1.15 | 0.002429 |
Target: 5'- cCCCGAAGCAUCCCCCAAAGCGUUUCCu -3' miRNA: 3'- -GGGCUUCGUAGGGGGUUUCGCAAAGG- -5' |
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27235 | 3' | -51.8 | NC_005832.1 | + | 37331 | 0.78 | 0.424377 |
Target: 5'- aCCCGAGGUAgcucaCCCCCAcguAGCaccuGUUUCCa -3' miRNA: 3'- -GGGCUUCGUa----GGGGGUu--UCG----CAAAGG- -5' |
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27235 | 3' | -51.8 | NC_005832.1 | + | 19759 | 0.78 | 0.452574 |
Target: 5'- --gGAGGCAgguucCCCCCGAGGCGcUUUCCc -3' miRNA: 3'- gggCUUCGUa----GGGGGUUUCGC-AAAGG- -5' |
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27235 | 3' | -51.8 | NC_005832.1 | + | 54664 | 0.76 | 0.57406 |
Target: 5'- gCCUGAggAGCAUCCUgucggCCAGGGCGgcgUCCc -3' miRNA: 3'- -GGGCU--UCGUAGGG-----GGUUUCGCaa-AGG- -5' |
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27235 | 3' | -51.8 | NC_005832.1 | + | 47935 | 0.73 | 0.711907 |
Target: 5'- uCUCGAGGCcgacgacuaCCCCGAGGCGgaggUCCu -3' miRNA: 3'- -GGGCUUCGuag------GGGGUUUCGCaa--AGG- -5' |
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27235 | 3' | -51.8 | NC_005832.1 | + | 35984 | 0.73 | 0.732549 |
Target: 5'- aCCUGAAGCGg--CCCGGGGCGUUguagugCCu -3' miRNA: 3'- -GGGCUUCGUaggGGGUUUCGCAAa-----GG- -5' |
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27235 | 3' | -51.8 | NC_005832.1 | + | 832 | 0.72 | 0.742734 |
Target: 5'- gCCCGAGGCGcacgucugcUCCCCCAGG----UUCCa -3' miRNA: 3'- -GGGCUUCGU---------AGGGGGUUUcgcaAAGG- -5' |
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27235 | 3' | -51.8 | NC_005832.1 | + | 39783 | 0.72 | 0.752813 |
Target: 5'- --aGAGGC--CCCCCGGAGCGgugggUCCa -3' miRNA: 3'- gggCUUCGuaGGGGGUUUCGCaa---AGG- -5' |
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27235 | 3' | -51.8 | NC_005832.1 | + | 25424 | 0.72 | 0.772614 |
Target: 5'- -aCGuGAGCGUCUCCCAGAGUGUggaCa -3' miRNA: 3'- ggGC-UUCGUAGGGGGUUUCGCAaagG- -5' |
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27235 | 3' | -51.8 | NC_005832.1 | + | 95758 | 0.71 | 0.819555 |
Target: 5'- uCCUaGGAGaaugucUCCUgCCAGAGCGUUUCCa -3' miRNA: 3'- -GGG-CUUCgu----AGGG-GGUUUCGCAAAGG- -5' |
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27235 | 3' | -51.8 | NC_005832.1 | + | 42418 | 0.7 | 0.861883 |
Target: 5'- cCCCGAGGa---CCCCGuGGCGgaUCUg -3' miRNA: 3'- -GGGCUUCguagGGGGUuUCGCaaAGG- -5' |
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27235 | 3' | -51.8 | NC_005832.1 | + | 78658 | 0.7 | 0.861883 |
Target: 5'- uCCCGggGUucaagccCgCCCCAGAGUGg--CCg -3' miRNA: 3'- -GGGCuuCGua-----G-GGGGUUUCGCaaaGG- -5' |
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27235 | 3' | -51.8 | NC_005832.1 | + | 92419 | 0.7 | 0.877289 |
Target: 5'- gCCCaGAGCcgUCCCCGucGCG--UCCu -3' miRNA: 3'- -GGGcUUCGuaGGGGGUuuCGCaaAGG- -5' |
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27235 | 3' | -51.8 | NC_005832.1 | + | 98142 | 0.69 | 0.898603 |
Target: 5'- uUCCGGAGaGUCUUCCAGAGaGUcUCCa -3' miRNA: 3'- -GGGCUUCgUAGGGGGUUUCgCAaAGG- -5' |
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27235 | 3' | -51.8 | NC_005832.1 | + | 81095 | 0.69 | 0.90521 |
Target: 5'- aCCGAcGCcaCCCUCAGGGCGUacaCCa -3' miRNA: 3'- gGGCUuCGuaGGGGGUUUCGCAaa-GG- -5' |
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27235 | 3' | -51.8 | NC_005832.1 | + | 94926 | 0.69 | 0.90521 |
Target: 5'- uCCCGAcAGUGUCUCCCGAucaggccGCGUcggCCc -3' miRNA: 3'- -GGGCU-UCGUAGGGGGUUu------CGCAaa-GG- -5' |
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27235 | 3' | -51.8 | NC_005832.1 | + | 87500 | 0.68 | 0.923491 |
Target: 5'- aCCaGGgcAGCGUCCUCCAGgcuGGCGg--CCa -3' miRNA: 3'- gGG-CU--UCGUAGGGGGUU---UCGCaaaGG- -5' |
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27235 | 3' | -51.8 | NC_005832.1 | + | 55692 | 0.68 | 0.933862 |
Target: 5'- gCCGGacaguguGGCGUCCUCCGAGaUGUcUCCu -3' miRNA: 3'- gGGCU-------UCGUAGGGGGUUUcGCAaAGG- -5' |
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27235 | 3' | -51.8 | NC_005832.1 | + | 65796 | 0.68 | 0.934382 |
Target: 5'- gCCCGugcuGgAUCCCCUGAAGaCGg--CCa -3' miRNA: 3'- -GGGCuu--CgUAGGGGGUUUC-GCaaaGG- -5' |
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27235 | 3' | -51.8 | NC_005832.1 | + | 45459 | 0.68 | 0.934382 |
Target: 5'- uUCGggGCAggCCCUCAGAGUcuuuaugUCCu -3' miRNA: 3'- gGGCuuCGUa-GGGGGUUUCGcaa----AGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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