miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27235 3' -51.8 NC_005832.1 + 90267 0.66 0.973768
Target:  5'- gCUCGAAGCAcucugcgagCCUCCuc-GCGUggUCCu -3'
miRNA:   3'- -GGGCUUCGUa--------GGGGGuuuCGCAa-AGG- -5'
27235 3' -51.8 NC_005832.1 + 52382 0.67 0.944237
Target:  5'- cCUCGuAGCAgagcauccucUCCUCCAGGGaagGUUUCCc -3'
miRNA:   3'- -GGGCuUCGU----------AGGGGGUUUCg--CAAAGG- -5'
27235 3' -51.8 NC_005832.1 + 43182 0.67 0.94878
Target:  5'- gCCGGgcuucuuugagGGCGcUCCCgCCAGgcuGGCGUggUCCg -3'
miRNA:   3'- gGGCU-----------UCGU-AGGG-GGUU---UCGCAa-AGG- -5'
27235 3' -51.8 NC_005832.1 + 99538 0.67 0.956719
Target:  5'- aCCGcuGGCAUCuCCUCGcccgucuuuaagcAGGCGUacUUCCa -3'
miRNA:   3'- gGGCu-UCGUAG-GGGGU-------------UUCGCA--AAGG- -5'
27235 3' -51.8 NC_005832.1 + 1738 0.67 0.957112
Target:  5'- gUCCGAGGCGUaCCUCCu--GUGg-UCCu -3'
miRNA:   3'- -GGGCUUCGUA-GGGGGuuuCGCaaAGG- -5'
27235 3' -51.8 NC_005832.1 + 47120 0.67 0.960909
Target:  5'- aCUGGAGgGUCcuggCCCCAGGGCacucgcUUUCCg -3'
miRNA:   3'- gGGCUUCgUAG----GGGGUUUCGc-----AAAGG- -5'
27235 3' -51.8 NC_005832.1 + 10740 0.66 0.967792
Target:  5'- cCCCGgcGUccugGUCCCaggCCGAGGCGUa--- -3'
miRNA:   3'- -GGGCuuCG----UAGGG---GGUUUCGCAaagg -5'
27235 3' -51.8 NC_005832.1 + 47425 0.66 0.97089
Target:  5'- gCCCaGGAGCGUCCCggccaCAAAGUccagCCu -3'
miRNA:   3'- -GGG-CUUCGUAGGGg----GUUUCGcaaaGG- -5'
27235 3' -51.8 NC_005832.1 + 60305 0.66 0.97089
Target:  5'- gCCCGAGGguUCCacguCCGuGGUGg--CCg -3'
miRNA:   3'- -GGGCUUCguAGGg---GGUuUCGCaaaGG- -5'
27235 3' -51.8 NC_005832.1 + 27066 0.67 0.944237
Target:  5'- aCCCGGAGCccccUUCUCCGuacuccucgacGAGCGccgcgUUCCa -3'
miRNA:   3'- -GGGCUUCGu---AGGGGGU-----------UUCGCa----AAGG- -5'
27235 3' -51.8 NC_005832.1 + 45459 0.68 0.934382
Target:  5'- uUCGggGCAggCCCUCAGAGUcuuuaugUCCu -3'
miRNA:   3'- gGGCuuCGUa-GGGGGUUUCGcaa----AGG- -5'
27235 3' -51.8 NC_005832.1 + 87500 0.68 0.923491
Target:  5'- aCCaGGgcAGCGUCCUCCAGgcuGGCGg--CCa -3'
miRNA:   3'- gGG-CU--UCGUAGGGGGUU---UCGCaaaGG- -5'
27235 3' -51.8 NC_005832.1 + 19759 0.78 0.452574
Target:  5'- --gGAGGCAgguucCCCCCGAGGCGcUUUCCc -3'
miRNA:   3'- gggCUUCGUa----GGGGGUUUCGC-AAAGG- -5'
27235 3' -51.8 NC_005832.1 + 35984 0.73 0.732549
Target:  5'- aCCUGAAGCGg--CCCGGGGCGUUguagugCCu -3'
miRNA:   3'- -GGGCUUCGUaggGGGUUUCGCAAa-----GG- -5'
27235 3' -51.8 NC_005832.1 + 832 0.72 0.742734
Target:  5'- gCCCGAGGCGcacgucugcUCCCCCAGG----UUCCa -3'
miRNA:   3'- -GGGCUUCGU---------AGGGGGUUUcgcaAAGG- -5'
27235 3' -51.8 NC_005832.1 + 39783 0.72 0.752813
Target:  5'- --aGAGGC--CCCCCGGAGCGgugggUCCa -3'
miRNA:   3'- gggCUUCGuaGGGGGUUUCGCaa---AGG- -5'
27235 3' -51.8 NC_005832.1 + 25424 0.72 0.772614
Target:  5'- -aCGuGAGCGUCUCCCAGAGUGUggaCa -3'
miRNA:   3'- ggGC-UUCGUAGGGGGUUUCGCAaagG- -5'
27235 3' -51.8 NC_005832.1 + 78658 0.7 0.861883
Target:  5'- uCCCGggGUucaagccCgCCCCAGAGUGg--CCg -3'
miRNA:   3'- -GGGCuuCGua-----G-GGGGUUUCGCaaaGG- -5'
27235 3' -51.8 NC_005832.1 + 42418 0.7 0.861883
Target:  5'- cCCCGAGGa---CCCCGuGGCGgaUCUg -3'
miRNA:   3'- -GGGCUUCguagGGGGUuUCGCaaAGG- -5'
27235 3' -51.8 NC_005832.1 + 92419 0.7 0.877289
Target:  5'- gCCCaGAGCcgUCCCCGucGCG--UCCu -3'
miRNA:   3'- -GGGcUUCGuaGGGGGUuuCGCaaAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.