miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27235 3' -51.8 NC_005832.1 + 453 0.66 0.975656
Target:  5'- cUCCGggGU-UCUugauacagaaggagCCCAGGGCGgcgUCCu -3'
miRNA:   3'- -GGGCuuCGuAGG--------------GGGUUUCGCaa-AGG- -5'
27235 3' -51.8 NC_005832.1 + 832 0.72 0.742734
Target:  5'- gCCCGAGGCGcacgucugcUCCCCCAGG----UUCCa -3'
miRNA:   3'- -GGGCUUCGU---------AGGGGGUUUcgcaAAGG- -5'
27235 3' -51.8 NC_005832.1 + 1738 0.67 0.957112
Target:  5'- gUCCGAGGCGUaCCUCCu--GUGg-UCCu -3'
miRNA:   3'- -GGGCUUCGUA-GGGGGuuuCGCaaAGG- -5'
27235 3' -51.8 NC_005832.1 + 6448 0.66 0.967792
Target:  5'- cCCCGccGCGUCCCCUccguucucGAGGCa----- -3'
miRNA:   3'- -GGGCuuCGUAGGGGG--------UUUCGcaaagg -5'
27235 3' -51.8 NC_005832.1 + 7547 0.66 0.964467
Target:  5'- gCCCaGGAGC-UCCCCgAGGgcacggaccccGCGUcgUCCa -3'
miRNA:   3'- -GGG-CUUCGuAGGGGgUUU-----------CGCAa-AGG- -5'
27235 3' -51.8 NC_005832.1 + 10682 0.66 0.967792
Target:  5'- cCUCGu--CAUCCCCCAAGaCGUUcgCCu -3'
miRNA:   3'- -GGGCuucGUAGGGGGUUUcGCAAa-GG- -5'
27235 3' -51.8 NC_005832.1 + 10740 0.66 0.967792
Target:  5'- cCCCGgcGUccugGUCCCaggCCGAGGCGUa--- -3'
miRNA:   3'- -GGGCuuCG----UAGGG---GGUUUCGCAaagg -5'
27235 3' -51.8 NC_005832.1 + 19759 0.78 0.452574
Target:  5'- --gGAGGCAgguucCCCCCGAGGCGcUUUCCc -3'
miRNA:   3'- gggCUUCGUa----GGGGGUUUCGC-AAAGG- -5'
27235 3' -51.8 NC_005832.1 + 19884 0.66 0.978896
Target:  5'- cCUCGggGgGaaccugccUCCCCCAAAGCcccugggCCu -3'
miRNA:   3'- -GGGCuuCgU--------AGGGGGUUUCGcaaa---GG- -5'
27235 3' -51.8 NC_005832.1 + 19956 0.66 0.976434
Target:  5'- cCUCGggGCAUCUccagCCCGgacgucaugcAGGCGg-UCCu -3'
miRNA:   3'- -GGGCuuCGUAGG----GGGU----------UUCGCaaAGG- -5'
27235 3' -51.8 NC_005832.1 + 21226 0.68 0.939439
Target:  5'- gCCGggGCGUCCCUacGGGCc---CCg -3'
miRNA:   3'- gGGCuuCGUAGGGGguUUCGcaaaGG- -5'
27235 3' -51.8 NC_005832.1 + 25424 0.72 0.772614
Target:  5'- -aCGuGAGCGUCUCCCAGAGUGUggaCa -3'
miRNA:   3'- ggGC-UUCGUAGGGGGUUUCGCAaagG- -5'
27235 3' -51.8 NC_005832.1 + 27066 0.67 0.944237
Target:  5'- aCCCGGAGCccccUUCUCCGuacuccucgacGAGCGccgcgUUCCa -3'
miRNA:   3'- -GGGCUUCGu---AGGGGGU-----------UUCGCa----AAGG- -5'
27235 3' -51.8 NC_005832.1 + 32036 0.66 0.973768
Target:  5'- -gCGAAGCGUCaaaCAuGGCGUUUUCu -3'
miRNA:   3'- ggGCUUCGUAGgggGUuUCGCAAAGG- -5'
27235 3' -51.8 NC_005832.1 + 35045 0.66 0.978896
Target:  5'- cCCUGAGGCuGUCUCCCAcAGaGg--CCa -3'
miRNA:   3'- -GGGCUUCG-UAGGGGGUuUCgCaaaGG- -5'
27235 3' -51.8 NC_005832.1 + 35984 0.73 0.732549
Target:  5'- aCCUGAAGCGg--CCCGGGGCGUUguagugCCu -3'
miRNA:   3'- -GGGCUUCGUaggGGGUUUCGCAAa-----GG- -5'
27235 3' -51.8 NC_005832.1 + 36563 0.68 0.934382
Target:  5'- aCCGAGGCcgCCagggUCGGAGUGU-UCCu -3'
miRNA:   3'- gGGCUUCGuaGGg---GGUUUCGCAaAGG- -5'
27235 3' -51.8 NC_005832.1 + 37331 0.78 0.424377
Target:  5'- aCCCGAGGUAgcucaCCCCCAcguAGCaccuGUUUCCa -3'
miRNA:   3'- -GGGCUUCGUa----GGGGGUu--UCG----CAAAGG- -5'
27235 3' -51.8 NC_005832.1 + 39783 0.72 0.752813
Target:  5'- --aGAGGC--CCCCCGGAGCGgugggUCCa -3'
miRNA:   3'- gggCUUCGuaGGGGGUUUCGCaa---AGG- -5'
27235 3' -51.8 NC_005832.1 + 42418 0.7 0.861883
Target:  5'- cCCCGAGGa---CCCCGuGGCGgaUCUg -3'
miRNA:   3'- -GGGCUUCguagGGGGUuUCGCaaAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.