miRNA display CGI


Results 1 - 20 of 41 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27236 3' -56.2 NC_005832.1 + 67539 0.66 0.824416
Target:  5'- gACcGGUUUGGGCCCuGCCGUuuGGGAccAGGa -3'
miRNA:   3'- -UGuCCGAGUCCGGG-UGGCA--CCUU--UUC- -5'
27236 3' -56.2 NC_005832.1 + 80109 0.66 0.822659
Target:  5'- -gAGGCUCAGGuacagguccaggagaCCCACgGUaauacuccaccugagGGAAGAGu -3'
miRNA:   3'- ugUCCGAGUCC---------------GGGUGgCA---------------CCUUUUC- -5'
27236 3' -56.2 NC_005832.1 + 102062 0.66 0.821777
Target:  5'- gGCAuGGCUCAGGagacgguaacaccgUCCGCCaUGGAGGc- -3'
miRNA:   3'- -UGU-CCGAGUCC--------------GGGUGGcACCUUUuc -5'
27236 3' -56.2 NC_005832.1 + 44714 0.66 0.815557
Target:  5'- -gAGGCUCAGGCaCAUgGUgucuGGAAAAa -3'
miRNA:   3'- ugUCCGAGUCCGgGUGgCA----CCUUUUc -5'
27236 3' -56.2 NC_005832.1 + 78252 0.66 0.806521
Target:  5'- -uGGGUUcCAGGCCaggaACC-UGGGAGAGc -3'
miRNA:   3'- ugUCCGA-GUCCGGg---UGGcACCUUUUC- -5'
27236 3' -56.2 NC_005832.1 + 1664 0.66 0.806521
Target:  5'- cCAGGCUCAGGC-CAUCGgcaguGAGg -3'
miRNA:   3'- uGUCCGAGUCCGgGUGGCaccuuUUC- -5'
27236 3' -56.2 NC_005832.1 + 1785 0.66 0.797316
Target:  5'- cCAuGGC-CAGGCCCcUCuUGGGAAAGa -3'
miRNA:   3'- uGU-CCGaGUCCGGGuGGcACCUUUUC- -5'
27236 3' -56.2 NC_005832.1 + 5563 0.66 0.797316
Target:  5'- gACGGuGCaCAGGCCCuCCGagUGGAGGc- -3'
miRNA:   3'- -UGUC-CGaGUCCGGGuGGC--ACCUUUuc -5'
27236 3' -56.2 NC_005832.1 + 97144 0.66 0.787953
Target:  5'- -aAGGCUgcGGCagaCGCCGUGGcAAAGa -3'
miRNA:   3'- ugUCCGAguCCGg--GUGGCACCuUUUC- -5'
27236 3' -56.2 NC_005832.1 + 22905 0.66 0.787953
Target:  5'- -aGGGCcauuuuaaacagUUGGGCCCAUC-UGGAAAAGu -3'
miRNA:   3'- ugUCCG------------AGUCCGGGUGGcACCUUUUC- -5'
27236 3' -56.2 NC_005832.1 + 17045 0.66 0.787953
Target:  5'- gGCAgGGC-CAGG-CCGCUGUcucuGGAGAAGa -3'
miRNA:   3'- -UGU-CCGaGUCCgGGUGGCA----CCUUUUC- -5'
27236 3' -56.2 NC_005832.1 + 29243 0.67 0.768789
Target:  5'- gACGGGUUCGGcGCCCGgCC-UGGGGu-- -3'
miRNA:   3'- -UGUCCGAGUC-CGGGU-GGcACCUUuuc -5'
27236 3' -56.2 NC_005832.1 + 2041 0.67 0.768789
Target:  5'- -uGGGgUCu-GCCCuccucACCGUGGAGAGGg -3'
miRNA:   3'- ugUCCgAGucCGGG-----UGGCACCUUUUC- -5'
27236 3' -56.2 NC_005832.1 + 53985 0.67 0.758023
Target:  5'- --cGGCaagaccuUCAuGGCCCuggaGCUGUGGAGGAGg -3'
miRNA:   3'- uguCCG-------AGU-CCGGG----UGGCACCUUUUC- -5'
27236 3' -56.2 NC_005832.1 + 41579 0.67 0.756049
Target:  5'- cCAGGCUgAGGCcgaggaggaggccgCCGCCGUcaGGGAGGc -3'
miRNA:   3'- uGUCCGAgUCCG--------------GGUGGCA--CCUUUUc -5'
27236 3' -56.2 NC_005832.1 + 104857 0.67 0.753081
Target:  5'- -aGGGUUCAGGuagagugucccaaaaCCC-CCGUGGAGuGGa -3'
miRNA:   3'- ugUCCGAGUCC---------------GGGuGGCACCUUuUC- -5'
27236 3' -56.2 NC_005832.1 + 94694 0.67 0.749107
Target:  5'- -gAGGCUCGuuaaaCCCGCCGUGGGc--- -3'
miRNA:   3'- ugUCCGAGUcc---GGGUGGCACCUuuuc -5'
27236 3' -56.2 NC_005832.1 + 55832 0.67 0.739096
Target:  5'- aGCcGG-UCAGGgCCGCCGUGGugguGGGg -3'
miRNA:   3'- -UGuCCgAGUCCgGGUGGCACCuu--UUC- -5'
27236 3' -56.2 NC_005832.1 + 24795 0.67 0.728986
Target:  5'- --cGGC-CAGGUCCACCGUGa----- -3'
miRNA:   3'- uguCCGaGUCCGGGUGGCACcuuuuc -5'
27236 3' -56.2 NC_005832.1 + 97201 0.67 0.72797
Target:  5'- gACAGGCUCcuggagcAGGCCUcgGCCGUGu----- -3'
miRNA:   3'- -UGUCCGAG-------UCCGGG--UGGCACcuuuuc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.