miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27238 3' -57 NC_005832.1 + 14106 0.66 0.823894
Target:  5'- gGCaCCCGUCG----AGACUCUUgUCCUg -3'
miRNA:   3'- -CG-GGGCAGUugcgUCUGAGAGgAGGG- -5'
27238 3' -57 NC_005832.1 + 70296 0.68 0.730857
Target:  5'- cCCCCGcCAaaucagaagACGCagggucAGACUUUgCUCCCa -3'
miRNA:   3'- cGGGGCaGU---------UGCG------UCUGAGAgGAGGG- -5'
27238 3' -57 NC_005832.1 + 30616 0.67 0.740705
Target:  5'- gGCgCCGUCAcCGCGaGCggUCUUCCCu -3'
miRNA:   3'- -CGgGGCAGUuGCGUcUGagAGGAGGG- -5'
27238 3' -57 NC_005832.1 + 98191 0.67 0.750456
Target:  5'- gGCCcaCCGUgGAaaaGCAGGCcgUCCUCCUg -3'
miRNA:   3'- -CGG--GGCAgUUg--CGUCUGagAGGAGGG- -5'
27238 3' -57 NC_005832.1 + 30113 0.67 0.779039
Target:  5'- uCCCUGUCGAgGgcuucCAGcUUCUCCUCCa -3'
miRNA:   3'- cGGGGCAGUUgC-----GUCuGAGAGGAGGg -5'
27238 3' -57 NC_005832.1 + 25315 0.66 0.797443
Target:  5'- uGCCUuaaaGUCGuC-CAGGCUCUCCaCCCu -3'
miRNA:   3'- -CGGGg---CAGUuGcGUCUGAGAGGaGGG- -5'
27238 3' -57 NC_005832.1 + 43486 0.66 0.806423
Target:  5'- uCCUCGUCccCGuCGGACUUUC-UCCCu -3'
miRNA:   3'- cGGGGCAGuuGC-GUCUGAGAGgAGGG- -5'
27238 3' -57 NC_005832.1 + 7107 0.66 0.823894
Target:  5'- uCCCCGgcggugacCAGCGUagaggAGGCUUcCCUCCUg -3'
miRNA:   3'- cGGGGCa-------GUUGCG-----UCUGAGaGGAGGG- -5'
27238 3' -57 NC_005832.1 + 95447 0.66 0.823894
Target:  5'- aGCCUCccguaGUCGGCGC--ACUC-CCUCUCg -3'
miRNA:   3'- -CGGGG-----CAGUUGCGucUGAGaGGAGGG- -5'
27238 3' -57 NC_005832.1 + 52381 0.68 0.710913
Target:  5'- aCCUCGUa---GCAGAgcaucCUCUCCUCCa -3'
miRNA:   3'- cGGGGCAguugCGUCU-----GAGAGGAGGg -5'
27238 3' -57 NC_005832.1 + 15634 0.68 0.710913
Target:  5'- uGCUCggUGUCGGaGCAGACgaugcgCUCCUCCg -3'
miRNA:   3'- -CGGG--GCAGUUgCGUCUGa-----GAGGAGGg -5'
27238 3' -57 NC_005832.1 + 31980 0.68 0.690697
Target:  5'- gGCCCCG-CAcAgGCAGucCUCUUCgCCCa -3'
miRNA:   3'- -CGGGGCaGU-UgCGUCu-GAGAGGaGGG- -5'
27238 3' -57 NC_005832.1 + 65226 0.73 0.406035
Target:  5'- -gCCCGUCGACagGUGGACUCUCaacggUCCCc -3'
miRNA:   3'- cgGGGCAGUUG--CGUCUGAGAGg----AGGG- -5'
27238 3' -57 NC_005832.1 + 1915 0.72 0.478861
Target:  5'- aGCCCCGUCuAC-CAGAUgagcagcaUCCUCCUc -3'
miRNA:   3'- -CGGGGCAGuUGcGUCUGag------AGGAGGG- -5'
27238 3' -57 NC_005832.1 + 32501 0.7 0.588046
Target:  5'- gGCCCUacgCgGGCGCAauGGCUC-CCUCCCa -3'
miRNA:   3'- -CGGGGca-G-UUGCGU--CUGAGaGGAGGG- -5'
27238 3' -57 NC_005832.1 + 10466 0.7 0.588046
Target:  5'- uCCCUGc---CGguGGCUCUCCUCCa -3'
miRNA:   3'- cGGGGCaguuGCguCUGAGAGGAGGg -5'
27238 3' -57 NC_005832.1 + 71920 0.7 0.61885
Target:  5'- uCCCCc-CAACGUGucUUCUCCUCCCa -3'
miRNA:   3'- cGGGGcaGUUGCGUcuGAGAGGAGGG- -5'
27238 3' -57 NC_005832.1 + 47608 0.69 0.629149
Target:  5'- -gCCCGUCAG-GCAGAgCUCcUCUUCCa -3'
miRNA:   3'- cgGGGCAGUUgCGUCU-GAG-AGGAGGg -5'
27238 3' -57 NC_005832.1 + 97028 0.69 0.649745
Target:  5'- aGUCCuaCGUgGugGCGGAC-CUggCCUCCCa -3'
miRNA:   3'- -CGGG--GCAgUugCGUCUGaGA--GGAGGG- -5'
27238 3' -57 NC_005832.1 + 39284 0.69 0.670284
Target:  5'- gGCCCCGcgGGCGCAGACggagUCCacgUCCa -3'
miRNA:   3'- -CGGGGCagUUGCGUCUGag--AGGa--GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.