miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27239 5' -55.1 NC_005832.1 + 13648 0.66 0.855158
Target:  5'- gGCGUGcAGGGAGGCCGCCua-CAGGa- -3'
miRNA:   3'- -UGCGU-UUCUUCCGGCGGcgaGUCUaa -5'
27239 5' -55.1 NC_005832.1 + 33486 0.66 0.846864
Target:  5'- uACGCAGAGAGGGUguCGCacuuGC-CGGAg- -3'
miRNA:   3'- -UGCGUUUCUUCCG--GCGg---CGaGUCUaa -5'
27239 5' -55.1 NC_005832.1 + 18255 0.66 0.846864
Target:  5'- uCGCGAAGGugaGGGCCaGUgGaCUCAGAg- -3'
miRNA:   3'- uGCGUUUCU---UCCGG-CGgC-GAGUCUaa -5'
27239 5' -55.1 NC_005832.1 + 10514 0.66 0.846864
Target:  5'- -aGCAGGGAcAGGCCGCUGC-CGu--- -3'
miRNA:   3'- ugCGUUUCU-UCCGGCGGCGaGUcuaa -5'
27239 5' -55.1 NC_005832.1 + 13039 0.66 0.838354
Target:  5'- --uCGGAGAcGGCUGCCaGCUCGGGg- -3'
miRNA:   3'- ugcGUUUCUuCCGGCGG-CGAGUCUaa -5'
27239 5' -55.1 NC_005832.1 + 48655 0.66 0.838354
Target:  5'- uACGCGuaccucgucAAcAAGGUCGCCGgUCAGAc- -3'
miRNA:   3'- -UGCGU---------UUcUUCCGGCGGCgAGUCUaa -5'
27239 5' -55.1 NC_005832.1 + 80795 0.66 0.838354
Target:  5'- uCGUAGacGGGAGGaCCGCCG-UCGGAc- -3'
miRNA:   3'- uGCGUU--UCUUCC-GGCGGCgAGUCUaa -5'
27239 5' -55.1 NC_005832.1 + 102090 0.66 0.838354
Target:  5'- cCGCcauGGAGGCCGCCGaggCAGc-- -3'
miRNA:   3'- uGCGuuuCUUCCGGCGGCga-GUCuaa -5'
27239 5' -55.1 NC_005832.1 + 48996 0.66 0.829637
Target:  5'- gACGUAGAGGAGGUCGCa-CUCGa--- -3'
miRNA:   3'- -UGCGUUUCUUCCGGCGgcGAGUcuaa -5'
27239 5' -55.1 NC_005832.1 + 94274 0.67 0.802331
Target:  5'- aGCGCGuggGAGAAGGCCGCagagacCGUggccaagCAGAa- -3'
miRNA:   3'- -UGCGU---UUCUUCCGGCG------GCGa------GUCUaa -5'
27239 5' -55.1 NC_005832.1 + 52719 0.67 0.80233
Target:  5'- -aGCGgcGgcGGCCGCCGCaaAGGUc -3'
miRNA:   3'- ugCGUuuCuuCCGGCGGCGagUCUAa -5'
27239 5' -55.1 NC_005832.1 + 97105 0.67 0.792875
Target:  5'- gACGCccuGGAGcAGGCCGCCGCgguGGc- -3'
miRNA:   3'- -UGCG---UUUCuUCCGGCGGCGaguCUaa -5'
27239 5' -55.1 NC_005832.1 + 10024 0.67 0.773494
Target:  5'- gGCGCGucggccgcGGAGGCCGUgGCUCAcGUg -3'
miRNA:   3'- -UGCGUuu------CUUCCGGCGgCGAGUcUAa -5'
27239 5' -55.1 NC_005832.1 + 36398 0.67 0.773494
Target:  5'- uCGCA---GAGGCCGCCGCgaGGGUc -3'
miRNA:   3'- uGCGUuucUUCCGGCGGCGagUCUAa -5'
27239 5' -55.1 NC_005832.1 + 42300 0.67 0.763589
Target:  5'- cUGCGAGGGAGGCCGUgGC-CAu--- -3'
miRNA:   3'- uGCGUUUCUUCCGGCGgCGaGUcuaa -5'
27239 5' -55.1 NC_005832.1 + 39274 0.68 0.753555
Target:  5'- gGCGUAAAG-GGGCC-CCGCgggcgCAGAc- -3'
miRNA:   3'- -UGCGUUUCuUCCGGcGGCGa----GUCUaa -5'
27239 5' -55.1 NC_005832.1 + 23631 0.68 0.722787
Target:  5'- gGCGUAAGGcAGGCCGgCGUaCAGGc- -3'
miRNA:   3'- -UGCGUUUCuUCCGGCgGCGaGUCUaa -5'
27239 5' -55.1 NC_005832.1 + 24750 0.68 0.716531
Target:  5'- aGCGuUAAGGAggaccuugagaccaaGGGCCGCCcgcuGCUCAGGa- -3'
miRNA:   3'- -UGC-GUUUCU---------------UCCGGCGG----CGAGUCUaa -5'
27239 5' -55.1 NC_005832.1 + 8244 0.68 0.712345
Target:  5'- ------cGAAGGCCGCCcuGCUCAGGg- -3'
miRNA:   3'- ugcguuuCUUCCGGCGG--CGAGUCUaa -5'
27239 5' -55.1 NC_005832.1 + 42491 0.69 0.691244
Target:  5'- gGCGCGAAGcAGGCCGaagaCGCcgaUCGGGc- -3'
miRNA:   3'- -UGCGUUUCuUCCGGCg---GCG---AGUCUaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.