miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2724 5' -52.4 NC_001491.2 + 22943 0.66 0.978052
Target:  5'- cGCGUAucuaaucugugccGGGGCGAuauuaacuuAUGCCUCUGGAg- -3'
miRNA:   3'- aCGUAU-------------UUCUGCU---------UGCGGGGACCUgc -5'
2724 5' -52.4 NC_001491.2 + 82456 0.66 0.975821
Target:  5'- cUGUGUucuGuAUGAACGCCCCgGGAgGa -3'
miRNA:   3'- -ACGUAuuuC-UGCUUGCGGGGaCCUgC- -5'
2724 5' -52.4 NC_001491.2 + 79778 0.66 0.973154
Target:  5'- aUGUAaaaguUGuuGACaAACGCCaCCUGGugGg -3'
miRNA:   3'- -ACGU-----AUuuCUGcUUGCGG-GGACCugC- -5'
2724 5' -52.4 NC_001491.2 + 85440 0.66 0.973154
Target:  5'- cGCAUGAgagucGGACGcgugUGCCCCgcGGGCa -3'
miRNA:   3'- aCGUAUU-----UCUGCuu--GCGGGGa-CCUGc -5'
2724 5' -52.4 NC_001491.2 + 94762 0.67 0.97028
Target:  5'- aGCucuuacGACGGuuacGCGCCUgCUGGACGg -3'
miRNA:   3'- aCGuauuu-CUGCU----UGCGGG-GACCUGC- -5'
2724 5' -52.4 NC_001491.2 + 115876 0.67 0.963884
Target:  5'- gUGCcaucc-ACGGGCGCCCCagGGGCa -3'
miRNA:   3'- -ACGuauuucUGCUUGCGGGGa-CCUGc -5'
2724 5' -52.4 NC_001491.2 + 70776 0.67 0.963884
Target:  5'- aGCucaGGAGAUucGCGCUCCUGGAa- -3'
miRNA:   3'- aCGua-UUUCUGcuUGCGGGGACCUgc -5'
2724 5' -52.4 NC_001491.2 + 137741 0.67 0.960349
Target:  5'- gGCGggc-GGCGGGCGCCCgCggguccccgGGGCGg -3'
miRNA:   3'- aCGUauuuCUGCUUGCGGG-Ga--------CCUGC- -5'
2724 5' -52.4 NC_001491.2 + 137612 0.68 0.95258
Target:  5'- cGCGgca--GCGGcCGCCCCgGGGCGg -3'
miRNA:   3'- aCGUauuucUGCUuGCGGGGaCCUGC- -5'
2724 5' -52.4 NC_001491.2 + 51281 0.68 0.948336
Target:  5'- cGCccucuGAGGCGGcaACGCcggccugguccCCCUGGGCGg -3'
miRNA:   3'- aCGuau--UUCUGCU--UGCG-----------GGGACCUGC- -5'
2724 5' -52.4 NC_001491.2 + 122295 0.68 0.942453
Target:  5'- aUGCGUAcAccuaucgacucaccGGCGAGCGCUuuUGGugGg -3'
miRNA:   3'- -ACGUAUuU--------------CUGCUUGCGGggACCugC- -5'
2724 5' -52.4 NC_001491.2 + 121664 0.68 0.939112
Target:  5'- gGCG---GGGCgcaGAACGCCCCUGGcCc -3'
miRNA:   3'- aCGUauuUCUG---CUUGCGGGGACCuGc -5'
2724 5' -52.4 NC_001491.2 + 13928 0.69 0.928893
Target:  5'- cGCGccGGGGCuGGCGgCCUUGGGCGg -3'
miRNA:   3'- aCGUauUUCUGcUUGCgGGGACCUGC- -5'
2724 5' -52.4 NC_001491.2 + 37685 0.69 0.911682
Target:  5'- gGCGUccacGGGGGCcGACGCCgCUUGGGCa -3'
miRNA:   3'- aCGUA----UUUCUGcUUGCGG-GGACCUGc -5'
2724 5' -52.4 NC_001491.2 + 8478 0.69 0.911682
Target:  5'- gGCAUcaAGAGGCGggUuCCgCUGGGCa -3'
miRNA:   3'- aCGUA--UUUCUGCuuGcGGgGACCUGc -5'
2724 5' -52.4 NC_001491.2 + 34412 0.69 0.905446
Target:  5'- cGCAUGGgcAGA-GAGCGCCCC-GGAg- -3'
miRNA:   3'- aCGUAUU--UCUgCUUGCGGGGaCCUgc -5'
2724 5' -52.4 NC_001491.2 + 23261 0.69 0.905446
Target:  5'- cGCAac-GGGCGcGCGCCgCCUGG-CGg -3'
miRNA:   3'- aCGUauuUCUGCuUGCGG-GGACCuGC- -5'
2724 5' -52.4 NC_001491.2 + 72861 0.7 0.898963
Target:  5'- gGCGUcuuuguGGGCGGGCGCgCCUGGcuCGg -3'
miRNA:   3'- aCGUAuu----UCUGCUUGCGgGGACCu-GC- -5'
2724 5' -52.4 NC_001491.2 + 137673 0.7 0.892237
Target:  5'- gGCGcgGGAGcgcGCGAGCGCCgCCUcgGGGCGc -3'
miRNA:   3'- aCGUa-UUUC---UGCUUGCGG-GGA--CCUGC- -5'
2724 5' -52.4 NC_001491.2 + 39065 0.7 0.885272
Target:  5'- uUGCGcc--GGCGGAgGUCCCUGGAUa -3'
miRNA:   3'- -ACGUauuuCUGCUUgCGGGGACCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.