miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27301 3' -50.6 NC_005856.1 + 2121 0.69 0.885711
Target:  5'- -aGGCA-GCCAGagaaCGAGCGAUCGCu -3'
miRNA:   3'- ggUCGUgUGGUCgua-GUUCGUUAGCG- -5'
27301 3' -50.6 NC_005856.1 + 2417 0.66 0.972853
Target:  5'- gCCGGUcguaccGCGCCGGguuGUCAuaaaaAGCAAUUGCc -3'
miRNA:   3'- -GGUCG------UGUGGUCg--UAGU-----UCGUUAGCG- -5'
27301 3' -50.6 NC_005856.1 + 8060 0.75 0.608894
Target:  5'- gCCAGCAUccggGCCAGgGUgGAGCAcccauuUCGCa -3'
miRNA:   3'- -GGUCGUG----UGGUCgUAgUUCGUu-----AGCG- -5'
27301 3' -50.6 NC_005856.1 + 11378 0.69 0.900014
Target:  5'- cCUGGCuuguuuuCuCCGGCAUUcuGGCGAUCGCa -3'
miRNA:   3'- -GGUCGu------GuGGUCGUAGu-UCGUUAGCG- -5'
27301 3' -50.6 NC_005856.1 + 11943 0.7 0.844664
Target:  5'- aCCGGCACAaucgUAGUAUUGgccuacacgccauAGCGAUCGCc -3'
miRNA:   3'- -GGUCGUGUg---GUCGUAGU-------------UCGUUAGCG- -5'
27301 3' -50.6 NC_005856.1 + 12053 0.67 0.95923
Target:  5'- --uGCAuccucCACCAGCGggcgCAGGCGuuugauauccGUCGCg -3'
miRNA:   3'- gguCGU-----GUGGUCGUa---GUUCGU----------UAGCG- -5'
27301 3' -50.6 NC_005856.1 + 12822 0.68 0.936414
Target:  5'- gCCAuGgACACCAGCcaguAUCGcacAGCGuaacgGUCGCg -3'
miRNA:   3'- -GGU-CgUGUGGUCG----UAGU---UCGU-----UAGCG- -5'
27301 3' -50.6 NC_005856.1 + 13432 0.67 0.963005
Target:  5'- aCCAGCgaagACGacgaCAGUgaugauucaAUCAcgcAGCAAUCGCa -3'
miRNA:   3'- -GGUCG----UGUg---GUCG---------UAGU---UCGUUAGCG- -5'
27301 3' -50.6 NC_005856.1 + 14693 0.66 0.972853
Target:  5'- gUCGGCGCACCucGCuauUCuGGUAAUCa- -3'
miRNA:   3'- -GGUCGUGUGGu-CGu--AGuUCGUUAGcg -5'
27301 3' -50.6 NC_005856.1 + 14813 0.7 0.870371
Target:  5'- -uGGCA-ACCAGCucAUCGuAGCGAUCGUg -3'
miRNA:   3'- ggUCGUgUGGUCG--UAGU-UCGUUAGCG- -5'
27301 3' -50.6 NC_005856.1 + 15612 0.68 0.919452
Target:  5'- uCCAGCuuaauuGCACCacggaaAGCAaacCAGGCGcgCGCa -3'
miRNA:   3'- -GGUCG------UGUGG------UCGUa--GUUCGUuaGCG- -5'
27301 3' -50.6 NC_005856.1 + 15659 0.67 0.958839
Target:  5'- uCCAGCGCcaguuaugacuccACCAGCuAUCAGGaCAcccUGCg -3'
miRNA:   3'- -GGUCGUG-------------UGGUCG-UAGUUC-GUua-GCG- -5'
27301 3' -50.6 NC_005856.1 + 15865 0.67 0.958839
Target:  5'- uCCAGUcCACCAGCu----GCAccauaucGUCGCu -3'
miRNA:   3'- -GGUCGuGUGGUCGuaguuCGU-------UAGCG- -5'
27301 3' -50.6 NC_005856.1 + 16053 0.67 0.946347
Target:  5'- uCCAGCGacCACCAGCAUauuuuuGCcAUaCGCc -3'
miRNA:   3'- -GGUCGU--GUGGUCGUAguu---CGuUA-GCG- -5'
27301 3' -50.6 NC_005856.1 + 17028 0.67 0.955199
Target:  5'- gCC-GUcCACCAGCGaaUUAAGCAaaucuAUCGCc -3'
miRNA:   3'- -GGuCGuGUGGUCGU--AGUUCGU-----UAGCG- -5'
27301 3' -50.6 NC_005856.1 + 19473 0.71 0.836789
Target:  5'- uCCAGC-CACCAGC-UC-GGCuuucgaucAUCGCg -3'
miRNA:   3'- -GGUCGuGUGGUCGuAGuUCGu-------UAGCG- -5'
27301 3' -50.6 NC_005856.1 + 25918 0.66 0.980649
Target:  5'- gCGGCGCAuUCGGCAUCAucauuGGCAGa--- -3'
miRNA:   3'- gGUCGUGU-GGUCGUAGU-----UCGUUagcg -5'
27301 3' -50.6 NC_005856.1 + 27005 0.7 0.870371
Target:  5'- gCGGCGCACCAGUAccgGAGCcGUCa- -3'
miRNA:   3'- gGUCGUGUGGUCGUag-UUCGuUAGcg -5'
27301 3' -50.6 NC_005856.1 + 27908 0.71 0.827834
Target:  5'- aCCAGCAgAUCAGCcagguggCGAGCug-CGCc -3'
miRNA:   3'- -GGUCGUgUGGUCGua-----GUUCGuuaGCG- -5'
27301 3' -50.6 NC_005856.1 + 28888 0.66 0.978014
Target:  5'- gUCAGCGCgcgagagugcccACCAGuCAUCcccgcagGGGCAaugguAUCGCg -3'
miRNA:   3'- -GGUCGUG------------UGGUC-GUAG-------UUCGU-----UAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.