miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27301 3' -50.6 NC_005856.1 + 91361 0.69 0.885711
Target:  5'- uCCAGCACugACCAGUuauuuUCAcGCuuUCGUu -3'
miRNA:   3'- -GGUCGUG--UGGUCGu----AGUuCGuuAGCG- -5'
27301 3' -50.6 NC_005856.1 + 91013 0.66 0.97647
Target:  5'- aUAGCGCGCgCGGCcuuccgcGcuucaacguuaucuaUCAGGUAAUCGCc -3'
miRNA:   3'- gGUCGUGUG-GUCG-------U---------------AGUUCGUUAGCG- -5'
27301 3' -50.6 NC_005856.1 + 90256 0.74 0.685702
Target:  5'- gCCGGgaGCACCAGCcUUggGUAAUgGCg -3'
miRNA:   3'- -GGUCg-UGUGGUCGuAGuuCGUUAgCG- -5'
27301 3' -50.6 NC_005856.1 + 89671 0.69 0.913246
Target:  5'- gCCAGuCAUGCCAGCGUgauauUGAGCGugacCGCu -3'
miRNA:   3'- -GGUC-GUGUGGUCGUA-----GUUCGUua--GCG- -5'
27301 3' -50.6 NC_005856.1 + 89421 0.67 0.95923
Target:  5'- gCGGCAgAcuucuuCCGGCAUCAGGUGcaucauGUUGCg -3'
miRNA:   3'- gGUCGUgU------GGUCGUAGUUCGU------UAGCG- -5'
27301 3' -50.6 NC_005856.1 + 86663 0.73 0.728693
Target:  5'- aCGGCACuACCGGCAgUUAAGCcuccAGUUGCc -3'
miRNA:   3'- gGUCGUG-UGGUCGU-AGUUCG----UUAGCG- -5'
27301 3' -50.6 NC_005856.1 + 85839 0.73 0.707345
Target:  5'- gCGGCAUAaaaAGCAUCuuGCGAUCGUa -3'
miRNA:   3'- gGUCGUGUgg-UCGUAGuuCGUUAGCG- -5'
27301 3' -50.6 NC_005856.1 + 85643 0.67 0.963005
Target:  5'- gCGGCGCugCGGCuUCAgaaAGCA--CGUa -3'
miRNA:   3'- gGUCGUGugGUCGuAGU---UCGUuaGCG- -5'
27301 3' -50.6 NC_005856.1 + 85338 0.69 0.892995
Target:  5'- gCCAGCACACUugaccgcuGUAUCGuggaGGCGGuuaaccaguUCGCg -3'
miRNA:   3'- -GGUCGUGUGGu-------CGUAGU----UCGUU---------AGCG- -5'
27301 3' -50.6 NC_005856.1 + 82827 0.74 0.65288
Target:  5'- gCAGCugGuuGGCAUCAuGC-GUCGCa -3'
miRNA:   3'- gGUCGugUggUCGUAGUuCGuUAGCG- -5'
27301 3' -50.6 NC_005856.1 + 78177 0.66 0.969809
Target:  5'- aCGGUAaGCCAGCAaaucCGGGCGAuaUUGCu -3'
miRNA:   3'- gGUCGUgUGGUCGUa---GUUCGUU--AGCG- -5'
27301 3' -50.6 NC_005856.1 + 76527 0.66 0.972853
Target:  5'- --cGCACACCAGaAUCAcuaAGCAGgcCGUg -3'
miRNA:   3'- gguCGUGUGGUCgUAGU---UCGUUa-GCG- -5'
27301 3' -50.6 NC_005856.1 + 75497 0.71 0.799775
Target:  5'- aCCGGCAcCGCCGaCAaCAGGCuguUCGCg -3'
miRNA:   3'- -GGUCGU-GUGGUcGUaGUUCGuu-AGCG- -5'
27301 3' -50.6 NC_005856.1 + 74731 0.68 0.936414
Target:  5'- cCCAGCACauagaACCGGUAUCccGGGCuAUCu- -3'
miRNA:   3'- -GGUCGUG-----UGGUCGUAG--UUCGuUAGcg -5'
27301 3' -50.6 NC_005856.1 + 74475 0.67 0.963005
Target:  5'- gCCAGCGCGgUAGgAUCGGG--AUUGCu -3'
miRNA:   3'- -GGUCGUGUgGUCgUAGUUCguUAGCG- -5'
27301 3' -50.6 NC_005856.1 + 73502 0.66 0.978264
Target:  5'- uCCAGUgucACACCuG-GUCG-GCAAUUGCg -3'
miRNA:   3'- -GGUCG---UGUGGuCgUAGUuCGUUAGCG- -5'
27301 3' -50.6 NC_005856.1 + 72443 0.66 0.980649
Target:  5'- uCC-GCACGCU-GU-UCAAGCGAUCGa -3'
miRNA:   3'- -GGuCGUGUGGuCGuAGUUCGUUAGCg -5'
27301 3' -50.6 NC_005856.1 + 66567 0.68 0.931036
Target:  5'- -gGGUACGCCuu-GUCAGGCAuucaguAUCGCg -3'
miRNA:   3'- ggUCGUGUGGucgUAGUUCGU------UAGCG- -5'
27301 3' -50.6 NC_005856.1 + 66179 0.68 0.931036
Target:  5'- uUCAGCcuUACCAGCGUCAAauuuGCGgaugaAUUGCu -3'
miRNA:   3'- -GGUCGu-GUGGUCGUAGUU----CGU-----UAGCG- -5'
27301 3' -50.6 NC_005856.1 + 64944 0.73 0.739228
Target:  5'- aCAGCACACaCGGCGggCAAGCuauAUCa- -3'
miRNA:   3'- gGUCGUGUG-GUCGUa-GUUCGu--UAGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.