miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27301 3' -50.6 NC_005856.1 + 64296 0.69 0.906766
Target:  5'- -aAGCGCAUuuaCAGCGuccUCAAGCGauuucguuguaGUCGCg -3'
miRNA:   3'- ggUCGUGUG---GUCGU---AGUUCGU-----------UAGCG- -5'
27301 3' -50.6 NC_005856.1 + 64086 0.73 0.718061
Target:  5'- gCCAGCACAgCCAGC-----GCAGUUGCc -3'
miRNA:   3'- -GGUCGUGU-GGUCGuaguuCGUUAGCG- -5'
27301 3' -50.6 NC_005856.1 + 62675 0.68 0.917002
Target:  5'- gUCAGCACAcauuuuuaucccuCCAGCAcacaucguuuucccUCcAGCAcacAUCGCg -3'
miRNA:   3'- -GGUCGUGU-------------GGUCGU--------------AGuUCGU---UAGCG- -5'
27301 3' -50.6 NC_005856.1 + 61532 0.69 0.913246
Target:  5'- uCCAGCACACaucgaAGCugcCGGGCAAgcCGUu -3'
miRNA:   3'- -GGUCGUGUGg----UCGua-GUUCGUUa-GCG- -5'
27301 3' -50.6 NC_005856.1 + 59603 0.69 0.900014
Target:  5'- aCAGCAUugCAGCAcagcauUCGAGaaauaGGUCuGCg -3'
miRNA:   3'- gGUCGUGugGUCGU------AGUUCg----UUAG-CG- -5'
27301 3' -50.6 NC_005856.1 + 58582 0.66 0.966187
Target:  5'- gCGGCACGCgCGGCAUCAucuuuaaugaauuGGUuAUCa- -3'
miRNA:   3'- gGUCGUGUG-GUCGUAGU-------------UCGuUAGcg -5'
27301 3' -50.6 NC_005856.1 + 58486 0.69 0.913246
Target:  5'- gCCAGUGCACUugcccacgcuguAGCGauUUGAGCGGUgGCa -3'
miRNA:   3'- -GGUCGUGUGG------------UCGU--AGUUCGUUAgCG- -5'
27301 3' -50.6 NC_005856.1 + 58357 0.66 0.972853
Target:  5'- uCCAGCAuCGCUuuauuaguGGCAUCcauGCuAUUGCg -3'
miRNA:   3'- -GGUCGU-GUGG--------UCGUAGuu-CGuUAGCG- -5'
27301 3' -50.6 NC_005856.1 + 57154 0.69 0.906766
Target:  5'- aCGGUugACCAGCGcCgGAGUggUCGg -3'
miRNA:   3'- gGUCGugUGGUCGUaG-UUCGuuAGCg -5'
27301 3' -50.6 NC_005856.1 + 57013 0.71 0.836789
Target:  5'- cUCAGaguCACCGGCAUCAAuCGuGUCGCc -3'
miRNA:   3'- -GGUCgu-GUGGUCGUAGUUcGU-UAGCG- -5'
27301 3' -50.6 NC_005856.1 + 56861 0.66 0.972853
Target:  5'- aCCGGUagauaacgucGCAUCGGCAugaUCGGGCuaacCGCg -3'
miRNA:   3'- -GGUCG----------UGUGGUCGU---AGUUCGuua-GCG- -5'
27301 3' -50.6 NC_005856.1 + 56216 0.67 0.95923
Target:  5'- gCGGCuauCACC-GCAUUAGGUaaaaucugugcaGAUCGCc -3'
miRNA:   3'- gGUCGu--GUGGuCGUAGUUCG------------UUAGCG- -5'
27301 3' -50.6 NC_005856.1 + 50718 1.15 0.002164
Target:  5'- aCCAGCACACCAGCAUCAAGCAAUCGCu -3'
miRNA:   3'- -GGUCGUGUGGUCGUAGUUCGUUAGCG- -5'
27301 3' -50.6 NC_005856.1 + 50569 0.67 0.950906
Target:  5'- aCCGGCAaaggUCAGCAguggcugaUgAAGCGAUUGCu -3'
miRNA:   3'- -GGUCGUgu--GGUCGU--------AgUUCGUUAGCG- -5'
27301 3' -50.6 NC_005856.1 + 49763 0.71 0.809317
Target:  5'- aCUGGUuuuaacaaACCAGCAUCAAGUAGcUUGCg -3'
miRNA:   3'- -GGUCGug------UGGUCGUAGUUCGUU-AGCG- -5'
27301 3' -50.6 NC_005856.1 + 49699 0.67 0.963005
Target:  5'- gCCAGCAaACUGGCAgguuUCuGAGCAgAUCGUc -3'
miRNA:   3'- -GGUCGUgUGGUCGU----AG-UUCGU-UAGCG- -5'
27301 3' -50.6 NC_005856.1 + 48804 0.75 0.597925
Target:  5'- gUCGGCAUACaGGCAguaugcaAAGCGAUCGCu -3'
miRNA:   3'- -GGUCGUGUGgUCGUag-----UUCGUUAGCG- -5'
27301 3' -50.6 NC_005856.1 + 43909 0.66 0.978264
Target:  5'- aCCAGCGCAUC-GCGUUGguuuuGGCuuuuUUGCg -3'
miRNA:   3'- -GGUCGUGUGGuCGUAGU-----UCGuu--AGCG- -5'
27301 3' -50.6 NC_005856.1 + 42748 0.69 0.899324
Target:  5'- -uGGCAU-CCAGCuuuUCAAGCAgcuuauuagauguAUCGCu -3'
miRNA:   3'- ggUCGUGuGGUCGu--AGUUCGU-------------UAGCG- -5'
27301 3' -50.6 NC_005856.1 + 41127 0.69 0.913246
Target:  5'- gUCAGCACGCCucAGC--CGGGCGuuaugCGCa -3'
miRNA:   3'- -GGUCGUGUGG--UCGuaGUUCGUua---GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.