miRNA display CGI


Results 1 - 20 of 63 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27301 3' -50.6 NC_005856.1 + 25918 0.66 0.980649
Target:  5'- gCGGCGCAuUCGGCAUCAucauuGGCAGa--- -3'
miRNA:   3'- gGUCGUGU-GGUCGUAGU-----UCGUUagcg -5'
27301 3' -50.6 NC_005856.1 + 64944 0.73 0.739228
Target:  5'- aCAGCACACaCGGCGggCAAGCuauAUCa- -3'
miRNA:   3'- gGUCGUGUG-GUCGUa-GUUCGu--UAGcg -5'
27301 3' -50.6 NC_005856.1 + 85839 0.73 0.707345
Target:  5'- gCGGCAUAaaaAGCAUCuuGCGAUCGUa -3'
miRNA:   3'- gGUCGUGUgg-UCGUAGuuCGUUAGCG- -5'
27301 3' -50.6 NC_005856.1 + 50718 1.15 0.002164
Target:  5'- aCCAGCACACCAGCAUCAAGCAAUCGCu -3'
miRNA:   3'- -GGUCGUGUGGUCGUAGUUCGUUAGCG- -5'
27301 3' -50.6 NC_005856.1 + 13432 0.67 0.963005
Target:  5'- aCCAGCgaagACGacgaCAGUgaugauucaAUCAcgcAGCAAUCGCa -3'
miRNA:   3'- -GGUCG----UGUg---GUCG---------UAGU---UCGUUAGCG- -5'
27301 3' -50.6 NC_005856.1 + 89421 0.67 0.95923
Target:  5'- gCGGCAgAcuucuuCCGGCAUCAGGUGcaucauGUUGCg -3'
miRNA:   3'- gGUCGUgU------GGUCGUAGUUCGU------UAGCG- -5'
27301 3' -50.6 NC_005856.1 + 15659 0.67 0.958839
Target:  5'- uCCAGCGCcaguuaugacuccACCAGCuAUCAGGaCAcccUGCg -3'
miRNA:   3'- -GGUCGUG-------------UGGUCG-UAGUUC-GUua-GCG- -5'
27301 3' -50.6 NC_005856.1 + 12822 0.68 0.936414
Target:  5'- gCCAuGgACACCAGCcaguAUCGcacAGCGuaacgGUCGCg -3'
miRNA:   3'- -GGU-CgUGUGGUCG----UAGU---UCGU-----UAGCG- -5'
27301 3' -50.6 NC_005856.1 + 59603 0.69 0.900014
Target:  5'- aCAGCAUugCAGCAcagcauUCGAGaaauaGGUCuGCg -3'
miRNA:   3'- gGUCGUGugGUCGU------AGUUCg----UUAG-CG- -5'
27301 3' -50.6 NC_005856.1 + 75497 0.71 0.799775
Target:  5'- aCCGGCAcCGCCGaCAaCAGGCuguUCGCg -3'
miRNA:   3'- -GGUCGU-GUGGUcGUaGUUCGuu-AGCG- -5'
27301 3' -50.6 NC_005856.1 + 91361 0.69 0.885711
Target:  5'- uCCAGCACugACCAGUuauuuUCAcGCuuUCGUu -3'
miRNA:   3'- -GGUCGUG--UGGUCGu----AGUuCGuuAGCG- -5'
27301 3' -50.6 NC_005856.1 + 61532 0.69 0.913246
Target:  5'- uCCAGCACACaucgaAGCugcCGGGCAAgcCGUu -3'
miRNA:   3'- -GGUCGUGUGg----UCGua-GUUCGUUa-GCG- -5'
27301 3' -50.6 NC_005856.1 + 39235 0.66 0.980649
Target:  5'- aCCGGCuuACAUCAGC--UAAGCAaaagucAUUGCu -3'
miRNA:   3'- -GGUCG--UGUGGUCGuaGUUCGU------UAGCG- -5'
27301 3' -50.6 NC_005856.1 + 19473 0.71 0.836789
Target:  5'- uCCAGC-CACCAGC-UC-GGCuuucgaucAUCGCg -3'
miRNA:   3'- -GGUCGuGUGGUCGuAGuUCGu-------UAGCG- -5'
27301 3' -50.6 NC_005856.1 + 72443 0.66 0.980649
Target:  5'- uCC-GCACGCU-GU-UCAAGCGAUCGa -3'
miRNA:   3'- -GGuCGUGUGGuCGuAGUUCGUUAGCg -5'
27301 3' -50.6 NC_005856.1 + 41127 0.69 0.913246
Target:  5'- gUCAGCACGCCucAGC--CGGGCGuuaugCGCa -3'
miRNA:   3'- -GGUCGUGUGG--UCGuaGUUCGUua---GCG- -5'
27301 3' -50.6 NC_005856.1 + 49763 0.71 0.809317
Target:  5'- aCUGGUuuuaacaaACCAGCAUCAAGUAGcUUGCg -3'
miRNA:   3'- -GGUCGug------UGGUCGUAGUUCGUU-AGCG- -5'
27301 3' -50.6 NC_005856.1 + 64086 0.73 0.718061
Target:  5'- gCCAGCACAgCCAGC-----GCAGUUGCc -3'
miRNA:   3'- -GGUCGUGU-GGUCGuaguuCGUUAGCG- -5'
27301 3' -50.6 NC_005856.1 + 91013 0.66 0.97647
Target:  5'- aUAGCGCGCgCGGCcuuccgcGcuucaacguuaucuaUCAGGUAAUCGCc -3'
miRNA:   3'- gGUCGUGUG-GUCG-------U---------------AGUUCGUUAGCG- -5'
27301 3' -50.6 NC_005856.1 + 56216 0.67 0.95923
Target:  5'- gCGGCuauCACC-GCAUUAGGUaaaaucugugcaGAUCGCc -3'
miRNA:   3'- gGUCGu--GUGGuCGUAGUUCG------------UUAGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.