miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27316 5' -48.1 NC_005856.1 + 41122 0.66 0.997779
Target:  5'- -cACGCCucaGCCGggCGUUAUGCGcacGGUaCCa -3'
miRNA:   3'- gaUGCGG---UGGUa-GCAAUGCGU---UUA-GG- -5'
27316 5' -48.1 NC_005856.1 + 14318 0.66 0.997779
Target:  5'- --uUGCCGCCGggcgCGUagccaGCGCAAuggauUCCg -3'
miRNA:   3'- gauGCGGUGGUa---GCAa----UGCGUUu----AGG- -5'
27316 5' -48.1 NC_005856.1 + 68218 0.66 0.997779
Target:  5'- -aACGCCGCUG-CGcgAUGUAAAUCa -3'
miRNA:   3'- gaUGCGGUGGUaGCaaUGCGUUUAGg -5'
27316 5' -48.1 NC_005856.1 + 38499 0.66 0.997338
Target:  5'- -gGCGgCACUAUUGUgaaaGCAAcgCCu -3'
miRNA:   3'- gaUGCgGUGGUAGCAaug-CGUUuaGG- -5'
27316 5' -48.1 NC_005856.1 + 14101 0.66 0.997338
Target:  5'- uCUGC-CCACCAgcgCGgugGCGCA-AUCg -3'
miRNA:   3'- -GAUGcGGUGGUa--GCaa-UGCGUuUAGg -5'
27316 5' -48.1 NC_005856.1 + 28937 0.66 0.997338
Target:  5'- -cGCGCCACCAgugCGaUUGaGCcGAUCa -3'
miRNA:   3'- gaUGCGGUGGUa--GC-AAUgCGuUUAGg -5'
27316 5' -48.1 NC_005856.1 + 45404 0.66 0.997338
Target:  5'- --cCGCUACCAUCGcgGC-CAacugaauuGAUCCa -3'
miRNA:   3'- gauGCGGUGGUAGCaaUGcGU--------UUAGG- -5'
27316 5' -48.1 NC_005856.1 + 14164 0.66 0.996826
Target:  5'- -cGCGCCGCC-UCuUUGCGaugggaaucgGAAUCCa -3'
miRNA:   3'- gaUGCGGUGGuAGcAAUGCg---------UUUAGG- -5'
27316 5' -48.1 NC_005856.1 + 9903 0.66 0.996826
Target:  5'- cCUGCG-CACCucaaCGUUAUGCuuGUCa -3'
miRNA:   3'- -GAUGCgGUGGua--GCAAUGCGuuUAGg -5'
27316 5' -48.1 NC_005856.1 + 89120 0.66 0.996826
Target:  5'- -cACGCCACCA-----GCGCGucaauUCCa -3'
miRNA:   3'- gaUGCGGUGGUagcaaUGCGUuu---AGG- -5'
27316 5' -48.1 NC_005856.1 + 80132 0.66 0.996235
Target:  5'- -aGCGCCGCaaacuUUGUUGCGCcgcgcgGAGUgCCg -3'
miRNA:   3'- gaUGCGGUGgu---AGCAAUGCG------UUUA-GG- -5'
27316 5' -48.1 NC_005856.1 + 88515 0.66 0.996235
Target:  5'- uCUGuCGCCGaCA-CGUUACGUAGAUUg -3'
miRNA:   3'- -GAU-GCGGUgGUaGCAAUGCGUUUAGg -5'
27316 5' -48.1 NC_005856.1 + 36209 0.66 0.995556
Target:  5'- --uCGCCuCCAgggcCGUUACGCGA--CCg -3'
miRNA:   3'- gauGCGGuGGUa---GCAAUGCGUUuaGG- -5'
27316 5' -48.1 NC_005856.1 + 43344 0.66 0.995556
Target:  5'- -cACGCC-CCAUUaacaacgACGCGAcgCCa -3'
miRNA:   3'- gaUGCGGuGGUAGcaa----UGCGUUuaGG- -5'
27316 5' -48.1 NC_005856.1 + 32522 0.66 0.995556
Target:  5'- --uCGCCuCCAgggcCGUUACGCGA--CCg -3'
miRNA:   3'- gauGCGGuGGUa---GCAAUGCGUUuaGG- -5'
27316 5' -48.1 NC_005856.1 + 67072 0.66 0.995556
Target:  5'- -cGCGUCGgCGUCGUUGUGCcacUCCg -3'
miRNA:   3'- gaUGCGGUgGUAGCAAUGCGuuuAGG- -5'
27316 5' -48.1 NC_005856.1 + 74780 0.67 0.9939
Target:  5'- -aACGCCGcuCCAUCGcUUACuuauGAGUCCg -3'
miRNA:   3'- gaUGCGGU--GGUAGC-AAUGcg--UUUAGG- -5'
27316 5' -48.1 NC_005856.1 + 2934 0.67 0.99178
Target:  5'- -aACGCCGCCG-CGaUAUGgAAcUCCa -3'
miRNA:   3'- gaUGCGGUGGUaGCaAUGCgUUuAGG- -5'
27316 5' -48.1 NC_005856.1 + 9171 0.67 0.99178
Target:  5'- --uUGCgAUCAUCGUUAUaGaCGAAUCCa -3'
miRNA:   3'- gauGCGgUGGUAGCAAUG-C-GUUUAGG- -5'
27316 5' -48.1 NC_005856.1 + 16080 0.68 0.989116
Target:  5'- aUACGCCAUUaAUCag-GCGCAuuUCCc -3'
miRNA:   3'- gAUGCGGUGG-UAGcaaUGCGUuuAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.