Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27318 | 5' | -56 | NC_005856.1 | + | 18029 | 0.66 | 0.828647 |
Target: 5'- aUCGCCGCUAA----AUCCCgCCAGguugcCGCu -3' miRNA: 3'- -GGCGGCGGUUuguaUAGGG-GGUC-----GCG- -5' |
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27318 | 5' | -56 | NC_005856.1 | + | 84082 | 0.71 | 0.527533 |
Target: 5'- uCCGCaGCCAGGCucguguuuUAUCCCUugcgaucucaCAGCGCc -3' miRNA: 3'- -GGCGgCGGUUUGu-------AUAGGGG----------GUCGCG- -5' |
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27318 | 5' | -56 | NC_005856.1 | + | 65996 | 0.69 | 0.652072 |
Target: 5'- aCGCauaaGCgCGAGCAUAUCCUCUGccugccGCGCg -3' miRNA: 3'- gGCGg---CG-GUUUGUAUAGGGGGU------CGCG- -5' |
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27318 | 5' | -56 | NC_005856.1 | + | 84231 | 0.69 | 0.683384 |
Target: 5'- aCG-CGCCAcuuCAaucuUAUCUUCCAGCGCg -3' miRNA: 3'- gGCgGCGGUuu-GU----AUAGGGGGUCGCG- -5' |
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27318 | 5' | -56 | NC_005856.1 | + | 64758 | 0.68 | 0.744542 |
Target: 5'- gCCGCCGCCGGugGgaugaaaaCaCCUGGUGCc -3' miRNA: 3'- -GGCGGCGGUUugUauag----G-GGGUCGCG- -5' |
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27318 | 5' | -56 | NC_005856.1 | + | 45270 | 0.67 | 0.764206 |
Target: 5'- aC-CCGCgAAAUAUgAUCCCCUgacauggacGGCGCa -3' miRNA: 3'- gGcGGCGgUUUGUA-UAGGGGG---------UCGCG- -5' |
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27318 | 5' | -56 | NC_005856.1 | + | 14318 | 0.73 | 0.458873 |
Target: 5'- uUGCCGCCGGGCGcGUag-CCAGCGCa -3' miRNA: 3'- gGCGGCGGUUUGUaUAgggGGUCGCG- -5' |
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27318 | 5' | -56 | NC_005856.1 | + | 9942 | 0.71 | 0.568458 |
Target: 5'- gUCGUCGauuucaaaaCAAACAgUGUUCCCCAGgGCg -3' miRNA: 3'- -GGCGGCg--------GUUUGU-AUAGGGGGUCgCG- -5' |
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27318 | 5' | -56 | NC_005856.1 | + | 15162 | 0.68 | 0.744542 |
Target: 5'- uCUGuUCGUCGGGCAccgauacggUGUCgUCCAGCGCa -3' miRNA: 3'- -GGC-GGCGGUUUGU---------AUAGgGGGUCGCG- -5' |
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27318 | 5' | -56 | NC_005856.1 | + | 84524 | 0.67 | 0.792754 |
Target: 5'- gCCGCgcucuuucacuuCGCCuuuCAUgcAUCCCCCuuacccauGCGCg -3' miRNA: 3'- -GGCG------------GCGGuuuGUA--UAGGGGGu-------CGCG- -5' |
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27318 | 5' | -56 | NC_005856.1 | + | 85165 | 0.66 | 0.819934 |
Target: 5'- uUCGCCG-UAGAUggAUUCCCacaGGCGCu -3' miRNA: 3'- -GGCGGCgGUUUGuaUAGGGGg--UCGCG- -5' |
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27318 | 5' | -56 | NC_005856.1 | + | 85488 | 0.74 | 0.386655 |
Target: 5'- aUCGauaaUGCCAAGCGUAUgCCCCGGCu- -3' miRNA: 3'- -GGCg---GCGGUUUGUAUAgGGGGUCGcg -5' |
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27318 | 5' | -56 | NC_005856.1 | + | 32699 | 0.67 | 0.792754 |
Target: 5'- cCCGCCGCgaaCGGAUAUGUa--CgGGCGCa -3' miRNA: 3'- -GGCGGCG---GUUUGUAUAgggGgUCGCG- -5' |
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27318 | 5' | -56 | NC_005856.1 | + | 77449 | 0.7 | 0.589228 |
Target: 5'- gCGCCGCCAAAagaGUAugcaUUCCCCAaaaucCGCa -3' miRNA: 3'- gGCGGCGGUUUg--UAU----AGGGGGUc----GCG- -5' |
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27318 | 5' | -56 | NC_005856.1 | + | 17562 | 0.74 | 0.378166 |
Target: 5'- gCCGCCuaagaaGCCGGACAguuguaccgGUgCCCCuGCGCg -3' miRNA: 3'- -GGCGG------CGGUUUGUa--------UAgGGGGuCGCG- -5' |
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27318 | 5' | -56 | NC_005856.1 | + | 15873 | 0.66 | 0.83208 |
Target: 5'- -gGCCGCCGGGCAUAgUgCUgaacaaaucgaacagCAGCGCc -3' miRNA: 3'- ggCGGCGGUUUGUAUaGgGG---------------GUCGCG- -5' |
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27318 | 5' | -56 | NC_005856.1 | + | 27725 | 0.67 | 0.773858 |
Target: 5'- aCCGUCGCCAGACGcgccguaCCCCAucuGuUGCa -3' miRNA: 3'- -GGCGGCGGUUUGUauag---GGGGU---C-GCG- -5' |
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27318 | 5' | -56 | NC_005856.1 | + | 2217 | 0.67 | 0.773858 |
Target: 5'- aCCGCCguaucGCUAAACAgaaagagcgCCCaCCAGCcaGCa -3' miRNA: 3'- -GGCGG-----CGGUUUGUaua------GGG-GGUCG--CG- -5' |
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27318 | 5' | -56 | NC_005856.1 | + | 78129 | 0.67 | 0.764206 |
Target: 5'- cCCGgCGgCGAGC--GUCacaaCCCAGCGUa -3' miRNA: 3'- -GGCgGCgGUUUGuaUAGg---GGGUCGCG- -5' |
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27318 | 5' | -56 | NC_005856.1 | + | 27991 | 0.67 | 0.75443 |
Target: 5'- aUCGCUucCCGGACAUuaCCCCgGGCGUu -3' miRNA: 3'- -GGCGGc-GGUUUGUAuaGGGGgUCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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