miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27410 3' -65.3 NC_005869.1 + 29429 1.08 0.000084
Target:  5'- cCCGCGCCGCCGCCCGCGGACCCAUCGc -3'
miRNA:   3'- -GGCGCGGCGGCGGGCGCCUGGGUAGC- -5'
27410 3' -65.3 NC_005869.1 + 27365 0.78 0.024319
Target:  5'- aCCGCGCCcugGCCGCCCGCcgcuggcaGGACCgCcUCGa -3'
miRNA:   3'- -GGCGCGG---CGGCGGGCG--------CCUGG-GuAGC- -5'
27410 3' -65.3 NC_005869.1 + 15479 0.77 0.028798
Target:  5'- cCCgGCGCCGCCGCgCGCGGcGCCguUCu -3'
miRNA:   3'- -GG-CGCGGCGGCGgGCGCC-UGGguAGc -5'
27410 3' -65.3 NC_005869.1 + 26431 0.77 0.031333
Target:  5'- gCgGCGCCGCCGCCugCGCGGGCCg---- -3'
miRNA:   3'- -GgCGCGGCGGCGG--GCGCCUGGguagc -5'
27410 3' -65.3 NC_005869.1 + 16214 0.74 0.047683
Target:  5'- gCUGCGCCGaggCGCCaCGCGGaACCCAccgCGg -3'
miRNA:   3'- -GGCGCGGCg--GCGG-GCGCC-UGGGUa--GC- -5'
27410 3' -65.3 NC_005869.1 + 22255 0.74 0.047683
Target:  5'- aCCGCacagCGCCGCCUGCGGACUCuUCu -3'
miRNA:   3'- -GGCGcg--GCGGCGGGCGCCUGGGuAGc -5'
27410 3' -65.3 NC_005869.1 + 16979 0.73 0.05955
Target:  5'- cCCGCGCCGCgUGcCCCGCaGGGCCgugCGg -3'
miRNA:   3'- -GGCGCGGCG-GC-GGGCG-CCUGGguaGC- -5'
27410 3' -65.3 NC_005869.1 + 18746 0.73 0.0647
Target:  5'- gCUGcCGCCGCCGCCCccgcccCGGcCCCcgCGg -3'
miRNA:   3'- -GGC-GCGGCGGCGGGc-----GCCuGGGuaGC- -5'
27410 3' -65.3 NC_005869.1 + 33648 0.72 0.070279
Target:  5'- cUCGgGCgGCCG-CCGCGGACCUcUCa -3'
miRNA:   3'- -GGCgCGgCGGCgGGCGCCUGGGuAGc -5'
27410 3' -65.3 NC_005869.1 + 17563 0.71 0.085151
Target:  5'- -aGCGCCGcCCGCCCgcaGCGGcggucccccGCCC-UCGg -3'
miRNA:   3'- ggCGCGGC-GGCGGG---CGCC---------UGGGuAGC- -5'
27410 3' -65.3 NC_005869.1 + 21750 0.7 0.105811
Target:  5'- uCCGCGCCGCCugcaggaagGUgUGCGGcCCCGagCGg -3'
miRNA:   3'- -GGCGCGGCGG---------CGgGCGCCuGGGUa-GC- -5'
27410 3' -65.3 NC_005869.1 + 22440 0.7 0.108703
Target:  5'- aCGCGCCGCgGucCCCGgGGACCgAa-- -3'
miRNA:   3'- gGCGCGGCGgC--GGGCgCCUGGgUagc -5'
27410 3' -65.3 NC_005869.1 + 25521 0.7 0.108703
Target:  5'- gCCGcCGCCGCCGaggCCGCGGAggCCGgcacgCGg -3'
miRNA:   3'- -GGC-GCGGCGGCg--GGCGCCUg-GGUa----GC- -5'
27410 3' -65.3 NC_005869.1 + 18042 0.69 0.124307
Target:  5'- aCGCGCCGCCccGUCCaGCGGcGCCUGgggCGc -3'
miRNA:   3'- gGCGCGGCGG--CGGG-CGCC-UGGGUa--GC- -5'
27410 3' -65.3 NC_005869.1 + 25800 0.69 0.127328
Target:  5'- gUGCGCUGggaccccCCGCCCGaGGGCCCGcCGc -3'
miRNA:   3'- gGCGCGGC-------GGCGGGCgCCUGGGUaGC- -5'
27410 3' -65.3 NC_005869.1 + 25738 0.69 0.127668
Target:  5'- cCCGCGCCGCCggGCCCaccuucguccagGUGGucACCCGcCa -3'
miRNA:   3'- -GGCGCGGCGG--CGGG------------CGCC--UGGGUaGc -5'
27410 3' -65.3 NC_005869.1 + 9462 0.69 0.131113
Target:  5'- aCgGCGCgGCCGCCCuccCGGGgCCGcagcUCGa -3'
miRNA:   3'- -GgCGCGgCGGCGGGc--GCCUgGGU----AGC- -5'
27410 3' -65.3 NC_005869.1 + 17496 0.69 0.131113
Target:  5'- gCGCGCCGCgugCGCCuCGCGccCCCAgagCGc -3'
miRNA:   3'- gGCGCGGCG---GCGG-GCGCcuGGGUa--GC- -5'
27410 3' -65.3 NC_005869.1 + 25633 0.68 0.134643
Target:  5'- aCCGCGagugcCCGCCGCCCcucUGGGCUCAc-- -3'
miRNA:   3'- -GGCGC-----GGCGGCGGGc--GCCUGGGUagc -5'
27410 3' -65.3 NC_005869.1 + 10730 0.68 0.141967
Target:  5'- -gGCGCgGCgGCCCccgaGCGGcACCCA-CGg -3'
miRNA:   3'- ggCGCGgCGgCGGG----CGCC-UGGGUaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.