Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27410 | 3' | -65.3 | NC_005869.1 | + | 6301 | 0.66 | 0.189109 |
Target: 5'- cCCGCaGCCGCUGCugaccCUGgGGACCgucaGUCa -3' miRNA: 3'- -GGCG-CGGCGGCG-----GGCgCCUGGg---UAGc -5' |
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27410 | 3' | -65.3 | NC_005869.1 | + | 7261 | 0.66 | 0.194018 |
Target: 5'- uCUGCuGCCGCCGCugCUGCGG-CCUuccuggagAUCGc -3' miRNA: 3'- -GGCG-CGGCGGCG--GGCGCCuGGG--------UAGC- -5' |
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27410 | 3' | -65.3 | NC_005869.1 | + | 9462 | 0.69 | 0.131113 |
Target: 5'- aCgGCGCgGCCGCCCuccCGGGgCCGcagcUCGa -3' miRNA: 3'- -GgCGCGgCGGCGGGc--GCCUgGGU----AGC- -5' |
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27410 | 3' | -65.3 | NC_005869.1 | + | 10730 | 0.68 | 0.141967 |
Target: 5'- -gGCGCgGCgGCCCccgaGCGGcACCCA-CGg -3' miRNA: 3'- ggCGCGgCGgCGGG----CGCC-UGGGUaGC- -5' |
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27410 | 3' | -65.3 | NC_005869.1 | + | 11224 | 0.66 | 0.194018 |
Target: 5'- cCCGagaGCCGCUgGCUgGUGGACCUggUGa -3' miRNA: 3'- -GGCg--CGGCGG-CGGgCGCCUGGGuaGC- -5' |
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27410 | 3' | -65.3 | NC_005869.1 | + | 13067 | 0.67 | 0.170551 |
Target: 5'- aCCGaggaGCCGCC-CUCGCGG-CCC-UCc -3' miRNA: 3'- -GGCg---CGGCGGcGGGCGCCuGGGuAGc -5' |
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27410 | 3' | -65.3 | NC_005869.1 | + | 13316 | 0.68 | 0.153638 |
Target: 5'- gCCGCcgGCCGCCGCcgCCGCGccuCCCGcUCc -3' miRNA: 3'- -GGCG--CGGCGGCG--GGCGCcu-GGGU-AGc -5' |
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27410 | 3' | -65.3 | NC_005869.1 | + | 13439 | 0.67 | 0.175032 |
Target: 5'- uCC-CGCCGCCaccaGCCgCGCcccgGGGCCC-UCGa -3' miRNA: 3'- -GGcGCGGCGG----CGG-GCG----CCUGGGuAGC- -5' |
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27410 | 3' | -65.3 | NC_005869.1 | + | 14967 | 0.66 | 0.194018 |
Target: 5'- aCGCGCCGCUGCguaacagcauccCCGgGGugCag-CGg -3' miRNA: 3'- gGCGCGGCGGCG------------GGCgCCugGguaGC- -5' |
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27410 | 3' | -65.3 | NC_005869.1 | + | 14972 | 0.67 | 0.170551 |
Target: 5'- aCgGCGUCGCCauCCUGCGGAauucCCCGUgGc -3' miRNA: 3'- -GgCGCGGCGGc-GGGCGCCU----GGGUAgC- -5' |
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27410 | 3' | -65.3 | NC_005869.1 | + | 15220 | 0.66 | 0.194018 |
Target: 5'- -gGCGcCCGCCGCCUGUccccGGAucacCCCGUg- -3' miRNA: 3'- ggCGC-GGCGGCGGGCG----CCU----GGGUAgc -5' |
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27410 | 3' | -65.3 | NC_005869.1 | + | 15361 | 0.67 | 0.166173 |
Target: 5'- gCCgGCGCCacccGCCGCCgGCGccgCCAUCGu -3' miRNA: 3'- -GG-CGCGG----CGGCGGgCGCcugGGUAGC- -5' |
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27410 | 3' | -65.3 | NC_005869.1 | + | 15406 | 0.66 | 0.209419 |
Target: 5'- gCCGCGCgCgucuccuccgugGCCGUcaCCGgGGACCCggUGg -3' miRNA: 3'- -GGCGCG-G------------CGGCG--GGCgCCUGGGuaGC- -5' |
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27410 | 3' | -65.3 | NC_005869.1 | + | 15479 | 0.77 | 0.028798 |
Target: 5'- cCCgGCGCCGCCGCgCGCGGcGCCguUCu -3' miRNA: 3'- -GG-CGCGGCGGCGgGCGCC-UGGguAGc -5' |
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27410 | 3' | -65.3 | NC_005869.1 | + | 16214 | 0.74 | 0.047683 |
Target: 5'- gCUGCGCCGaggCGCCaCGCGGaACCCAccgCGg -3' miRNA: 3'- -GGCGCGGCg--GCGG-GCGCC-UGGGUa--GC- -5' |
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27410 | 3' | -65.3 | NC_005869.1 | + | 16753 | 0.67 | 0.166173 |
Target: 5'- gCCGCGCCcgagguGCUGCCCaGCcucCCCGUCu -3' miRNA: 3'- -GGCGCGG------CGGCGGG-CGccuGGGUAGc -5' |
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27410 | 3' | -65.3 | NC_005869.1 | + | 16979 | 0.73 | 0.05955 |
Target: 5'- cCCGCGCCGCgUGcCCCGCaGGGCCgugCGg -3' miRNA: 3'- -GGCGCGGCG-GC-GGGCG-CCUGGguaGC- -5' |
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27410 | 3' | -65.3 | NC_005869.1 | + | 17073 | 0.66 | 0.220263 |
Target: 5'- aCCGCgGUCGCCuccguGCgCGCGGcaGCCCAa-- -3' miRNA: 3'- -GGCG-CGGCGG-----CGgGCGCC--UGGGUagc -5' |
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27410 | 3' | -65.3 | NC_005869.1 | + | 17362 | 0.67 | 0.175032 |
Target: 5'- aCgGCgGCCGCCGCCCGCuccaGCgCcgCGg -3' miRNA: 3'- -GgCG-CGGCGGCGGGCGcc--UGgGuaGC- -5' |
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27410 | 3' | -65.3 | NC_005869.1 | + | 17496 | 0.69 | 0.131113 |
Target: 5'- gCGCGCCGCgugCGCCuCGCGccCCCAgagCGc -3' miRNA: 3'- gGCGCGGCG---GCGG-GCGCcuGGGUa--GC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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