miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27410 3' -65.3 NC_005869.1 + 17563 0.71 0.085151
Target:  5'- -aGCGCCGcCCGCCCgcaGCGGcggucccccGCCC-UCGg -3'
miRNA:   3'- ggCGCGGC-GGCGGG---CGCC---------UGGGuAGC- -5'
27410 3' -65.3 NC_005869.1 + 17896 0.67 0.184309
Target:  5'- gCCgGCGCUGgUGCCCaucaucGCGGcAUCCAUCu -3'
miRNA:   3'- -GG-CGCGGCgGCGGG------CGCC-UGGGUAGc -5'
27410 3' -65.3 NC_005869.1 + 18042 0.69 0.124307
Target:  5'- aCGCGCCGCCccGUCCaGCGGcGCCUGgggCGc -3'
miRNA:   3'- gGCGCGGCGG--CGGG-CGCC-UGGGUa--GC- -5'
27410 3' -65.3 NC_005869.1 + 18459 0.66 0.194018
Target:  5'- cCUGCGCCGCCGCCgGgugcuccgccucCGGcGCgCCAcCGc -3'
miRNA:   3'- -GGCGCGGCGGCGGgC------------GCC-UG-GGUaGC- -5'
27410 3' -65.3 NC_005869.1 + 18533 0.66 0.220263
Target:  5'- cCCGCG-CGCCaauCCCGCGGGacguCCCGcCa -3'
miRNA:   3'- -GGCGCgGCGGc--GGGCGCCU----GGGUaGc -5'
27410 3' -65.3 NC_005869.1 + 18568 0.68 0.153638
Target:  5'- gCC-CGCCGCCGCCCa-GGAgaUCAUCa -3'
miRNA:   3'- -GGcGCGGCGGCGGGcgCCUg-GGUAGc -5'
27410 3' -65.3 NC_005869.1 + 18573 0.66 0.209419
Target:  5'- gCgGCGCCGggcuaCCGCcuccaCCGCGuuGACCaCAUCGg -3'
miRNA:   3'- -GgCGCGGC-----GGCG-----GGCGC--CUGG-GUAGC- -5'
27410 3' -65.3 NC_005869.1 + 18746 0.73 0.0647
Target:  5'- gCUGcCGCCGCCGCCCccgcccCGGcCCCcgCGg -3'
miRNA:   3'- -GGC-GCGGCGGCGGGc-----GCCuGGGuaGC- -5'
27410 3' -65.3 NC_005869.1 + 21750 0.7 0.105811
Target:  5'- uCCGCGCCGCCugcaggaagGUgUGCGGcCCCGagCGg -3'
miRNA:   3'- -GGCGCGGCGG---------CGgGCGCCuGGGUa-GC- -5'
27410 3' -65.3 NC_005869.1 + 22062 0.67 0.166173
Target:  5'- gCCGCcacuggcugGCCGUCGCCUG-GGAgCCCGccUCGc -3'
miRNA:   3'- -GGCG---------CGGCGGCGGGCgCCU-GGGU--AGC- -5'
27410 3' -65.3 NC_005869.1 + 22225 0.68 0.153638
Target:  5'- aUGCGCCGCagaGCCUGCucccaaGGCUCGUCc -3'
miRNA:   3'- gGCGCGGCGg--CGGGCGc-----CUGGGUAGc -5'
27410 3' -65.3 NC_005869.1 + 22255 0.74 0.047683
Target:  5'- aCCGCacagCGCCGCCUGCGGACUCuUCu -3'
miRNA:   3'- -GGCGcg--GCGGCGGGCGCCUGGGuAGc -5'
27410 3' -65.3 NC_005869.1 + 22440 0.7 0.108703
Target:  5'- aCGCGCCGCgGucCCCGgGGACCgAa-- -3'
miRNA:   3'- gGCGCGGCGgC--GGGCgCCUGGgUagc -5'
27410 3' -65.3 NC_005869.1 + 22587 0.66 0.189109
Target:  5'- cUCGCGCCGCCGCgaggUGCuGACCacgCGc -3'
miRNA:   3'- -GGCGCGGCGGCGg---GCGcCUGGguaGC- -5'
27410 3' -65.3 NC_005869.1 + 23289 0.66 0.209419
Target:  5'- cUCGCGCagggcgCGCUGCCCGUucucgcuguuGaGAUCCAUCu -3'
miRNA:   3'- -GGCGCG------GCGGCGGGCG----------C-CUGGGUAGc -5'
27410 3' -65.3 NC_005869.1 + 23302 0.66 0.199038
Target:  5'- cCCGUgGgUGCCGCUCGgGGGCCgCcgCGc -3'
miRNA:   3'- -GGCG-CgGCGGCGGGCgCCUGG-GuaGC- -5'
27410 3' -65.3 NC_005869.1 + 23412 0.68 0.145765
Target:  5'- uCCGCGCCcagggcGCCgGCCgGCGGcUUCAUCu -3'
miRNA:   3'- -GGCGCGG------CGG-CGGgCGCCuGGGUAGc -5'
27410 3' -65.3 NC_005869.1 + 23795 0.66 0.209419
Target:  5'- gCCGCGCCGUCGCC-GCug--CCGUCu -3'
miRNA:   3'- -GGCGCGGCGGCGGgCGccugGGUAGc -5'
27410 3' -65.3 NC_005869.1 + 24455 0.66 0.220263
Target:  5'- -aGCucaGCCGCCGCCUggaaGCGG-CCCucuUCu -3'
miRNA:   3'- ggCG---CGGCGGCGGG----CGCCuGGGu--AGc -5'
27410 3' -65.3 NC_005869.1 + 24666 0.67 0.166173
Target:  5'- gCCgGCGCCGUCcccgGCCUGCGcccCCCGUCc -3'
miRNA:   3'- -GG-CGCGGCGG----CGGGCGCcu-GGGUAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.