miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27410 3' -65.3 NC_005869.1 + 23412 0.68 0.145765
Target:  5'- uCCGCGCCcagggcGCCgGCCgGCGGcUUCAUCu -3'
miRNA:   3'- -GGCGCGG------CGG-CGGgCGCCuGGGUAGc -5'
27410 3' -65.3 NC_005869.1 + 22225 0.68 0.153638
Target:  5'- aUGCGCCGCagaGCCUGCucccaaGGCUCGUCc -3'
miRNA:   3'- gGCGCGGCGg--CGGGCGc-----CUGGGUAGc -5'
27410 3' -65.3 NC_005869.1 + 13316 0.68 0.153638
Target:  5'- gCCGCcgGCCGCCGCcgCCGCGccuCCCGcUCc -3'
miRNA:   3'- -GGCG--CGGCGGCG--GGCGCcu-GGGU-AGc -5'
27410 3' -65.3 NC_005869.1 + 18568 0.68 0.153638
Target:  5'- gCC-CGCCGCCGCCCa-GGAgaUCAUCa -3'
miRNA:   3'- -GGcGCGGCGGCGGGcgCCUg-GGUAGc -5'
27410 3' -65.3 NC_005869.1 + 26271 0.67 0.156484
Target:  5'- gCCGCGCCuucaaggcccugcgGCaCGCCCuGCaGGCCCGccUCa -3'
miRNA:   3'- -GGCGCGG--------------CG-GCGGG-CGcCUGGGU--AGc -5'
27410 3' -65.3 NC_005869.1 + 15361 0.67 0.166173
Target:  5'- gCCgGCGCCacccGCCGCCgGCGccgCCAUCGu -3'
miRNA:   3'- -GG-CGCGG----CGGCGGgCGCcugGGUAGC- -5'
27410 3' -65.3 NC_005869.1 + 22062 0.67 0.166173
Target:  5'- gCCGCcacuggcugGCCGUCGCCUG-GGAgCCCGccUCGc -3'
miRNA:   3'- -GGCG---------CGGCGGCGGGCgCCU-GGGU--AGC- -5'
27410 3' -65.3 NC_005869.1 + 16753 0.67 0.166173
Target:  5'- gCCGCGCCcgagguGCUGCCCaGCcucCCCGUCu -3'
miRNA:   3'- -GGCGCGG------CGGCGGG-CGccuGGGUAGc -5'
27410 3' -65.3 NC_005869.1 + 24666 0.67 0.166173
Target:  5'- gCCgGCGCCGUCcccgGCCUGCGcccCCCGUCc -3'
miRNA:   3'- -GG-CGCGGCGG----CGGGCGCcu-GGGUAGc -5'
27410 3' -65.3 NC_005869.1 + 13067 0.67 0.170551
Target:  5'- aCCGaggaGCCGCC-CUCGCGG-CCC-UCc -3'
miRNA:   3'- -GGCg---CGGCGGcGGGCGCCuGGGuAGc -5'
27410 3' -65.3 NC_005869.1 + 14972 0.67 0.170551
Target:  5'- aCgGCGUCGCCauCCUGCGGAauucCCCGUgGc -3'
miRNA:   3'- -GgCGCGGCGGc-GGGCGCCU----GGGUAgC- -5'
27410 3' -65.3 NC_005869.1 + 17362 0.67 0.175032
Target:  5'- aCgGCgGCCGCCGCCCGCuccaGCgCcgCGg -3'
miRNA:   3'- -GgCG-CGGCGGCGGGCGcc--UGgGuaGC- -5'
27410 3' -65.3 NC_005869.1 + 13439 0.67 0.175032
Target:  5'- uCC-CGCCGCCaccaGCCgCGCcccgGGGCCC-UCGa -3'
miRNA:   3'- -GGcGCGGCGG----CGG-GCG----CCUGGGuAGC- -5'
27410 3' -65.3 NC_005869.1 + 28596 0.67 0.178231
Target:  5'- aCCGCGCCccGCCGCugccaCCGCcccucaccuaugugGGACCCu--- -3'
miRNA:   3'- -GGCGCGG--CGGCG-----GGCG--------------CCUGGGuagc -5'
27410 3' -65.3 NC_005869.1 + 17896 0.67 0.184309
Target:  5'- gCCgGCGCUGgUGCCCaucaucGCGGcAUCCAUCu -3'
miRNA:   3'- -GG-CGCGGCgGCGGG------CGCC-UGGGUAGc -5'
27410 3' -65.3 NC_005869.1 + 6301 0.66 0.189109
Target:  5'- cCCGCaGCCGCUGCugaccCUGgGGACCgucaGUCa -3'
miRNA:   3'- -GGCG-CGGCGGCG-----GGCgCCUGGg---UAGc -5'
27410 3' -65.3 NC_005869.1 + 22587 0.66 0.189109
Target:  5'- cUCGCGCCGCCGCgaggUGCuGACCacgCGc -3'
miRNA:   3'- -GGCGCGGCGGCGg---GCGcCUGGguaGC- -5'
27410 3' -65.3 NC_005869.1 + 7261 0.66 0.194018
Target:  5'- uCUGCuGCCGCCGCugCUGCGG-CCUuccuggagAUCGc -3'
miRNA:   3'- -GGCG-CGGCGGCG--GGCGCCuGGG--------UAGC- -5'
27410 3' -65.3 NC_005869.1 + 14967 0.66 0.194018
Target:  5'- aCGCGCCGCUGCguaacagcauccCCGgGGugCag-CGg -3'
miRNA:   3'- gGCGCGGCGGCG------------GGCgCCugGguaGC- -5'
27410 3' -65.3 NC_005869.1 + 11224 0.66 0.194018
Target:  5'- cCCGagaGCCGCUgGCUgGUGGACCUggUGa -3'
miRNA:   3'- -GGCg--CGGCGG-CGGgCGCCUGGGuaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.