miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27410 3' -65.3 NC_005869.1 + 33832 0.66 0.208889
Target:  5'- gCCGCucgGCC-CCGcCCCGCGGAggaccgcCCCAg-- -3'
miRNA:   3'- -GGCG---CGGcGGC-GGGCGCCU-------GGGUagc -5'
27410 3' -65.3 NC_005869.1 + 33648 0.72 0.070279
Target:  5'- cUCGgGCgGCCG-CCGCGGACCUcUCa -3'
miRNA:   3'- -GGCgCGgCGGCgGGCGCCUGGGuAGc -5'
27410 3' -65.3 NC_005869.1 + 29429 1.08 0.000084
Target:  5'- cCCGCGCCGCCGCCCGCGGACCCAUCGc -3'
miRNA:   3'- -GGCGCGGCGGCGGGCGCCUGGGUAGC- -5'
27410 3' -65.3 NC_005869.1 + 28596 0.67 0.178231
Target:  5'- aCCGCGCCccGCCGCugccaCCGCcccucaccuaugugGGACCCu--- -3'
miRNA:   3'- -GGCGCGG--CGGCG-----GGCG--------------CCUGGGuagc -5'
27410 3' -65.3 NC_005869.1 + 27365 0.78 0.024319
Target:  5'- aCCGCGCCcugGCCGCCCGCcgcuggcaGGACCgCcUCGa -3'
miRNA:   3'- -GGCGCGG---CGGCGGGCG--------CCUGG-GuAGC- -5'
27410 3' -65.3 NC_005869.1 + 27146 0.66 0.214782
Target:  5'- aCCGCGCCaGCCgGCCC-CaGGCgCCGcaccUCGg -3'
miRNA:   3'- -GGCGCGG-CGG-CGGGcGcCUG-GGU----AGC- -5'
27410 3' -65.3 NC_005869.1 + 26647 0.66 0.214782
Target:  5'- cCCGCGCCGCgacuaCGCGGACUgggaggagggCGUCa -3'
miRNA:   3'- -GGCGCGGCGgcgg-GCGCCUGG----------GUAGc -5'
27410 3' -65.3 NC_005869.1 + 26431 0.77 0.031333
Target:  5'- gCgGCGCCGCCGCCugCGCGGGCCg---- -3'
miRNA:   3'- -GgCGCGGCGGCGG--GCGCCUGGguagc -5'
27410 3' -65.3 NC_005869.1 + 26271 0.67 0.156484
Target:  5'- gCCGCGCCuucaaggcccugcgGCaCGCCCuGCaGGCCCGccUCa -3'
miRNA:   3'- -GGCGCGG--------------CG-GCGGG-CGcCUGGGU--AGc -5'
27410 3' -65.3 NC_005869.1 + 25800 0.69 0.127328
Target:  5'- gUGCGCUGggaccccCCGCCCGaGGGCCCGcCGc -3'
miRNA:   3'- gGCGCGGC-------GGCGGGCgCCUGGGUaGC- -5'
27410 3' -65.3 NC_005869.1 + 25738 0.69 0.127668
Target:  5'- cCCGCGCCGCCggGCCCaccuucguccagGUGGucACCCGcCa -3'
miRNA:   3'- -GGCGCGGCGG--CGGG------------CGCC--UGGGUaGc -5'
27410 3' -65.3 NC_005869.1 + 25633 0.68 0.134643
Target:  5'- aCCGCGagugcCCGCCGCCCcucUGGGCUCAc-- -3'
miRNA:   3'- -GGCGC-----GGCGGCGGGc--GCCUGGGUagc -5'
27410 3' -65.3 NC_005869.1 + 25521 0.7 0.108703
Target:  5'- gCCGcCGCCGCCGaggCCGCGGAggCCGgcacgCGg -3'
miRNA:   3'- -GGC-GCGGCGGCg--GGCGCCUg-GGUa----GC- -5'
27410 3' -65.3 NC_005869.1 + 24666 0.67 0.166173
Target:  5'- gCCgGCGCCGUCcccgGCCUGCGcccCCCGUCc -3'
miRNA:   3'- -GG-CGCGGCGG----CGGGCGCcu-GGGUAGc -5'
27410 3' -65.3 NC_005869.1 + 24455 0.66 0.220263
Target:  5'- -aGCucaGCCGCCGCCUggaaGCGG-CCCucuUCu -3'
miRNA:   3'- ggCG---CGGCGGCGGG----CGCCuGGGu--AGc -5'
27410 3' -65.3 NC_005869.1 + 23795 0.66 0.209419
Target:  5'- gCCGCGCCGUCGCC-GCug--CCGUCu -3'
miRNA:   3'- -GGCGCGGCGGCGGgCGccugGGUAGc -5'
27410 3' -65.3 NC_005869.1 + 23412 0.68 0.145765
Target:  5'- uCCGCGCCcagggcGCCgGCCgGCGGcUUCAUCu -3'
miRNA:   3'- -GGCGCGG------CGG-CGGgCGCCuGGGUAGc -5'
27410 3' -65.3 NC_005869.1 + 23302 0.66 0.199038
Target:  5'- cCCGUgGgUGCCGCUCGgGGGCCgCcgCGc -3'
miRNA:   3'- -GGCG-CgGCGGCGGGCgCCUGG-GuaGC- -5'
27410 3' -65.3 NC_005869.1 + 23289 0.66 0.209419
Target:  5'- cUCGCGCagggcgCGCUGCCCGUucucgcuguuGaGAUCCAUCu -3'
miRNA:   3'- -GGCGCG------GCGGCGGGCG----------C-CUGGGUAGc -5'
27410 3' -65.3 NC_005869.1 + 22587 0.66 0.189109
Target:  5'- cUCGCGCCGCCGCgaggUGCuGACCacgCGc -3'
miRNA:   3'- -GGCGCGGCGGCGg---GCGcCUGGguaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.