miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27410 3' -65.3 NC_005869.1 + 27146 0.66 0.214782
Target:  5'- aCCGCGCCaGCCgGCCC-CaGGCgCCGcaccUCGg -3'
miRNA:   3'- -GGCGCGG-CGG-CGGGcGcCUG-GGU----AGC- -5'
27410 3' -65.3 NC_005869.1 + 18042 0.69 0.124307
Target:  5'- aCGCGCCGCCccGUCCaGCGGcGCCUGgggCGc -3'
miRNA:   3'- gGCGCGGCGG--CGGG-CGCC-UGGGUa--GC- -5'
27410 3' -65.3 NC_005869.1 + 22440 0.7 0.108703
Target:  5'- aCGCGCCGCgGucCCCGgGGACCgAa-- -3'
miRNA:   3'- gGCGCGGCGgC--GGGCgCCUGGgUagc -5'
27410 3' -65.3 NC_005869.1 + 29429 1.08 0.000084
Target:  5'- cCCGCGCCGCCGCCCGCGGACCCAUCGc -3'
miRNA:   3'- -GGCGCGGCGGCGGGCGCCUGGGUAGC- -5'
27410 3' -65.3 NC_005869.1 + 23302 0.66 0.199038
Target:  5'- cCCGUgGgUGCCGCUCGgGGGCCgCcgCGc -3'
miRNA:   3'- -GGCG-CgGCGGCGGGCgCCUGG-GuaGC- -5'
27410 3' -65.3 NC_005869.1 + 18459 0.66 0.194018
Target:  5'- cCUGCGCCGCCGCCgGgugcuccgccucCGGcGCgCCAcCGc -3'
miRNA:   3'- -GGCGCGGCGGCGGgC------------GCC-UG-GGUaGC- -5'
27410 3' -65.3 NC_005869.1 + 6301 0.66 0.189109
Target:  5'- cCCGCaGCCGCUGCugaccCUGgGGACCgucaGUCa -3'
miRNA:   3'- -GGCG-CGGCGGCG-----GGCgCCUGGg---UAGc -5'
27410 3' -65.3 NC_005869.1 + 22587 0.66 0.189109
Target:  5'- cUCGCGCCGCCGCgaggUGCuGACCacgCGc -3'
miRNA:   3'- -GGCGCGGCGGCGg---GCGcCUGGguaGC- -5'
27410 3' -65.3 NC_005869.1 + 24666 0.67 0.166173
Target:  5'- gCCgGCGCCGUCcccgGCCUGCGcccCCCGUCc -3'
miRNA:   3'- -GG-CGCGGCGG----CGGGCGCcu-GGGUAGc -5'
27410 3' -65.3 NC_005869.1 + 25800 0.69 0.127328
Target:  5'- gUGCGCUGggaccccCCGCCCGaGGGCCCGcCGc -3'
miRNA:   3'- gGCGCGGC-------GGCGGGCgCCUGGGUaGC- -5'
27410 3' -65.3 NC_005869.1 + 22225 0.68 0.153638
Target:  5'- aUGCGCCGCagaGCCUGCucccaaGGCUCGUCc -3'
miRNA:   3'- gGCGCGGCGg--CGGGCGc-----CUGGGUAGc -5'
27410 3' -65.3 NC_005869.1 + 14972 0.67 0.170551
Target:  5'- aCgGCGUCGCCauCCUGCGGAauucCCCGUgGc -3'
miRNA:   3'- -GgCGCGGCGGc-GGGCGCCU----GGGUAgC- -5'
27410 3' -65.3 NC_005869.1 + 26647 0.66 0.214782
Target:  5'- cCCGCGCCGCgacuaCGCGGACUgggaggagggCGUCa -3'
miRNA:   3'- -GGCGCGGCGgcgg-GCGCCUGG----------GUAGc -5'
27410 3' -65.3 NC_005869.1 + 23412 0.68 0.145765
Target:  5'- uCCGCGCCcagggcGCCgGCCgGCGGcUUCAUCu -3'
miRNA:   3'- -GGCGCGG------CGG-CGGgCGCCuGGGUAGc -5'
27410 3' -65.3 NC_005869.1 + 18573 0.66 0.209419
Target:  5'- gCgGCGCCGggcuaCCGCcuccaCCGCGuuGACCaCAUCGg -3'
miRNA:   3'- -GgCGCGGC-----GGCG-----GGCGC--CUGG-GUAGC- -5'
27410 3' -65.3 NC_005869.1 + 17362 0.67 0.175032
Target:  5'- aCgGCgGCCGCCGCCCGCuccaGCgCcgCGg -3'
miRNA:   3'- -GgCG-CGGCGGCGGGCGcc--UGgGuaGC- -5'
27410 3' -65.3 NC_005869.1 + 25738 0.69 0.127668
Target:  5'- cCCGCGCCGCCggGCCCaccuucguccagGUGGucACCCGcCa -3'
miRNA:   3'- -GGCGCGGCGG--CGGG------------CGCC--UGGGUaGc -5'
27410 3' -65.3 NC_005869.1 + 25521 0.7 0.108703
Target:  5'- gCCGcCGCCGCCGaggCCGCGGAggCCGgcacgCGg -3'
miRNA:   3'- -GGC-GCGGCGGCg--GGCGCCUg-GGUa----GC- -5'
27410 3' -65.3 NC_005869.1 + 33832 0.66 0.208889
Target:  5'- gCCGCucgGCC-CCGcCCCGCGGAggaccgcCCCAg-- -3'
miRNA:   3'- -GGCG---CGGcGGC-GGGCGCCU-------GGGUagc -5'
27410 3' -65.3 NC_005869.1 + 7261 0.66 0.194018
Target:  5'- uCUGCuGCCGCCGCugCUGCGG-CCUuccuggagAUCGc -3'
miRNA:   3'- -GGCG-CGGCGGCG--GGCGCCuGGG--------UAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.