miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27411 3' -58.1 NC_005869.1 + 20365 0.67 0.367643
Target:  5'- gGCGGaGGCGACgcuccCUGCGGCGGcgCUg -3'
miRNA:   3'- aCGCUcCCGUUGau---GGCGUCGCCa-GG- -5'
27411 3' -58.1 NC_005869.1 + 31086 0.67 0.367643
Target:  5'- aGCGgcuGGGGCugaAGCUGCCcaGGCGG-CCg -3'
miRNA:   3'- aCGC---UCCCG---UUGAUGGcgUCGCCaGG- -5'
27411 3' -58.1 NC_005869.1 + 10138 0.67 0.358895
Target:  5'- cGCGGGGGag---GCCGCAagcgcGCGG-CCu -3'
miRNA:   3'- aCGCUCCCguugaUGGCGU-----CGCCaGG- -5'
27411 3' -58.1 NC_005869.1 + 7171 0.67 0.358895
Target:  5'- -uUGAGGGCGuccugGCCGCcGCGGcUCUg -3'
miRNA:   3'- acGCUCCCGUuga--UGGCGuCGCC-AGG- -5'
27411 3' -58.1 NC_005869.1 + 14125 0.67 0.358895
Target:  5'- -cCGAGGGCAACUucuCgGaCAucGCGGUCa -3'
miRNA:   3'- acGCUCCCGUUGAu--GgC-GU--CGCCAGg -5'
27411 3' -58.1 NC_005869.1 + 12997 0.67 0.358895
Target:  5'- --gGAGGGCcGCcucaUGCuGCGGUCCg -3'
miRNA:   3'- acgCUCCCGuUGaug-GCGuCGCCAGG- -5'
27411 3' -58.1 NC_005869.1 + 11724 0.67 0.350295
Target:  5'- aGCuGGGGCGGCgGCgGCGGgGGUg- -3'
miRNA:   3'- aCGcUCCCGUUGaUGgCGUCgCCAgg -5'
27411 3' -58.1 NC_005869.1 + 5574 0.67 0.350295
Target:  5'- aGCuGuGGGCGucGCUGCgGCAGCGcUCg -3'
miRNA:   3'- aCG-CuCCCGU--UGAUGgCGUCGCcAGg -5'
27411 3' -58.1 NC_005869.1 + 7612 0.67 0.341842
Target:  5'- cGCGcaGGcGGCGGC-GCCGCAGCuGGgcauaggCCa -3'
miRNA:   3'- aCGC--UC-CCGUUGaUGGCGUCG-CCa------GG- -5'
27411 3' -58.1 NC_005869.1 + 5120 0.68 0.325381
Target:  5'- gGCGuAGGGCAugUcCUGCAG-GG-CCu -3'
miRNA:   3'- aCGC-UCCCGUugAuGGCGUCgCCaGG- -5'
27411 3' -58.1 NC_005869.1 + 20750 0.68 0.309517
Target:  5'- cUGcCGGGGGCGACcuacACCuacgAGUGGUCCu -3'
miRNA:   3'- -AC-GCUCCCGUUGa---UGGcg--UCGCCAGG- -5'
27411 3' -58.1 NC_005869.1 + 16460 0.69 0.294249
Target:  5'- aGcCGAGGGCGggggACcGCCGCuGCGGg-- -3'
miRNA:   3'- aC-GCUCCCGU----UGaUGGCGuCGCCagg -5'
27411 3' -58.1 NC_005869.1 + 23382 0.69 0.286838
Target:  5'- gGCGAGGGCG---ACCGagAGCGcGUCg -3'
miRNA:   3'- aCGCUCCCGUugaUGGCg-UCGC-CAGg -5'
27411 3' -58.1 NC_005869.1 + 21147 0.69 0.279574
Target:  5'- -cCGAGGGCAGCca--GCGGgGGUUCa -3'
miRNA:   3'- acGCUCCCGUUGauggCGUCgCCAGG- -5'
27411 3' -58.1 NC_005869.1 + 18409 0.69 0.279574
Target:  5'- uUGCGGaGGCGGCgGCUGCGGCGcaCCc -3'
miRNA:   3'- -ACGCUcCCGUUGaUGGCGUCGCcaGG- -5'
27411 3' -58.1 NC_005869.1 + 28445 0.69 0.272458
Target:  5'- gUGCGAGacccaguGCGagcGCUGCCGCAGCGacgCCc -3'
miRNA:   3'- -ACGCUCc------CGU---UGAUGGCGUCGCca-GG- -5'
27411 3' -58.1 NC_005869.1 + 17077 0.69 0.272458
Target:  5'- cGCGGGGGCucgGCacggGCgGUGGUGGcCCg -3'
miRNA:   3'- aCGCUCCCGu--UGa---UGgCGUCGCCaGG- -5'
27411 3' -58.1 NC_005869.1 + 20975 0.69 0.258663
Target:  5'- cGCGAGGGCGGCU-CCucggucagggGCAGgGGg-- -3'
miRNA:   3'- aCGCUCCCGUUGAuGG----------CGUCgCCagg -5'
27411 3' -58.1 NC_005869.1 + 20292 0.7 0.251322
Target:  5'- gGUG-GGGCccAGgUACCGCGGCGGcacauaaagaggcUCCg -3'
miRNA:   3'- aCGCuCCCG--UUgAUGGCGUCGCC-------------AGG- -5'
27411 3' -58.1 NC_005869.1 + 6638 0.7 0.23279
Target:  5'- aGCuGAGGG--GCUcgggGCCGUcgaGGCGGUCCu -3'
miRNA:   3'- aCG-CUCCCguUGA----UGGCG---UCGCCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.