miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27419 5' -58.4 NC_005869.1 + 33154 0.66 0.405534
Target:  5'- aGGGUGG-CGCaaGUgGGUccucaAACACCACa -3'
miRNA:   3'- -UCCACCaGUGggCGgUCG-----UUGUGGUG- -5'
27419 5' -58.4 NC_005869.1 + 17363 0.66 0.396128
Target:  5'- cGGcGGccgcCGCCCGCUc-CAGCGCCGCg -3'
miRNA:   3'- uCCaCCa---GUGGGCGGucGUUGUGGUG- -5'
27419 5' -58.4 NC_005869.1 + 12102 0.66 0.396128
Target:  5'- cAGGUGaUCGCCCagcGCgAGCGcucgaGCGCCAa -3'
miRNA:   3'- -UCCACcAGUGGG---CGgUCGU-----UGUGGUg -5'
27419 5' -58.4 NC_005869.1 + 24240 0.66 0.396128
Target:  5'- gGGGcaUGGccgaccgCAUCCGCCuGCAGCgcgccgGCCGCa -3'
miRNA:   3'- -UCC--ACCa------GUGGGCGGuCGUUG------UGGUG- -5'
27419 5' -58.4 NC_005869.1 + 25988 0.66 0.386864
Target:  5'- aGGGUGGagcCcUCCGCCuGCGuCAUCACg -3'
miRNA:   3'- -UCCACCa--GuGGGCGGuCGUuGUGGUG- -5'
27419 5' -58.4 NC_005869.1 + 13650 0.66 0.386864
Target:  5'- gAGGaGGauga-UGCCAGCAGCGCCGCc -3'
miRNA:   3'- -UCCaCCaguggGCGGUCGUUGUGGUG- -5'
27419 5' -58.4 NC_005869.1 + 23420 0.66 0.37684
Target:  5'- cAGGg---CGCCgGCCGGCGGCuucaucuGCCGCa -3'
miRNA:   3'- -UCCaccaGUGGgCGGUCGUUG-------UGGUG- -5'
27419 5' -58.4 NC_005869.1 + 24973 0.66 0.363456
Target:  5'- uGGUGGUCagcgacgagcagcugGCCCGCUGGaugcACACCuCg -3'
miRNA:   3'- uCCACCAG---------------UGGGCGGUCgu--UGUGGuG- -5'
27419 5' -58.4 NC_005869.1 + 17148 0.66 0.359068
Target:  5'- gGGGUGGgCACCgaGCCGGUGGugcagucCAUCACg -3'
miRNA:   3'- -UCCACCaGUGGg-CGGUCGUU-------GUGGUG- -5'
27419 5' -58.4 NC_005869.1 + 15059 0.67 0.333527
Target:  5'- gGGGUGGUgACCCcgaggguGCuCAGCAGCcgaACCu- -3'
miRNA:   3'- -UCCACCAgUGGG-------CG-GUCGUUG---UGGug -5'
27419 5' -58.4 NC_005869.1 + 30981 0.67 0.326129
Target:  5'- -uGUGuUCuccuCCCGCCGcuuguGCAGCACCACc -3'
miRNA:   3'- ucCACcAGu---GGGCGGU-----CGUUGUGGUG- -5'
27419 5' -58.4 NC_005869.1 + 24400 0.67 0.318052
Target:  5'- cAGGaGGcCGCCC-CCGGCGcaGCCGCg -3'
miRNA:   3'- -UCCaCCaGUGGGcGGUCGUugUGGUG- -5'
27419 5' -58.4 NC_005869.1 + 17883 0.68 0.272762
Target:  5'- gGGGUGG-CAuCCUGCCGGCGcuggugcccauCAUCGCg -3'
miRNA:   3'- -UCCACCaGU-GGGCGGUCGUu----------GUGGUG- -5'
27419 5' -58.4 NC_005869.1 + 13290 0.69 0.265737
Target:  5'- uAGGUguaGGUCGCCC-CCGGCAggaGCAgCAg -3'
miRNA:   3'- -UCCA---CCAGUGGGcGGUCGU---UGUgGUg -5'
27419 5' -58.4 NC_005869.1 + 15576 0.69 0.265737
Target:  5'- gAGGcGGagCACCCGgCGGCGGCGCagGCg -3'
miRNA:   3'- -UCCaCCa-GUGGGCgGUCGUUGUGg-UG- -5'
27419 5' -58.4 NC_005869.1 + 20079 0.69 0.252127
Target:  5'- cGGUGGUCgACCUGCaggaCAGgAAUACCGa -3'
miRNA:   3'- uCCACCAG-UGGGCG----GUCgUUGUGGUg -5'
27419 5' -58.4 NC_005869.1 + 26564 0.69 0.24554
Target:  5'- --cUGGUCACCCgcaccuucauGCCGcGCAACgGCCGCa -3'
miRNA:   3'- uccACCAGUGGG----------CGGU-CGUUG-UGGUG- -5'
27419 5' -58.4 NC_005869.1 + 15345 0.69 0.24489
Target:  5'- -cGUGGUCAacgcgaUCGCCGGCGccacccgccgccgGCGCCGCc -3'
miRNA:   3'- ucCACCAGUg-----GGCGGUCGU-------------UGUGGUG- -5'
27419 5' -58.4 NC_005869.1 + 9902 0.69 0.239097
Target:  5'- cAGGUGGgugCGaccguagcCCCGCagggggcgCAGCAGCGCCAg -3'
miRNA:   3'- -UCCACCa--GU--------GGGCG--------GUCGUUGUGGUg -5'
27419 5' -58.4 NC_005869.1 + 16640 0.69 0.239097
Target:  5'- gGGGUGGggggCACcaccgCCGUCAGCcGCACCu- -3'
miRNA:   3'- -UCCACCa---GUG-----GGCGGUCGuUGUGGug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.