miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27419 5' -58.4 NC_005869.1 + 23004 0.69 0.232795
Target:  5'- cAGG-GG-CACCUGgCGGCAGCcccaGCCGCa -3'
miRNA:   3'- -UCCaCCaGUGGGCgGUCGUUG----UGGUG- -5'
27419 5' -58.4 NC_005869.1 + 14283 0.7 0.214726
Target:  5'- aAGcUGGUCauGCCCGgCAGCuACACCAa -3'
miRNA:   3'- -UCcACCAG--UGGGCgGUCGuUGUGGUg -5'
27419 5' -58.4 NC_005869.1 + 17556 0.7 0.208975
Target:  5'- cGGUGGcagcgcCGCCCGCCcGCAGCGgCGg -3'
miRNA:   3'- uCCACCa-----GUGGGCGGuCGUUGUgGUg -5'
27419 5' -58.4 NC_005869.1 + 27373 0.71 0.187288
Target:  5'- --cUGGcCGCCCGCCgcuGGCAGgACCGCc -3'
miRNA:   3'- uccACCaGUGGGCGG---UCGUUgUGGUG- -5'
27419 5' -58.4 NC_005869.1 + 7601 0.71 0.187288
Target:  5'- gAGG-GGcgGCCCGCgcaggCGGCGGCGCCGCa -3'
miRNA:   3'- -UCCaCCagUGGGCG-----GUCGUUGUGGUG- -5'
27419 5' -58.4 NC_005869.1 + 8303 0.71 0.182185
Target:  5'- aAGGUGG--GCCCggcggcgcggGCCAGCucCACCGCg -3'
miRNA:   3'- -UCCACCagUGGG----------CGGUCGuuGUGGUG- -5'
27419 5' -58.4 NC_005869.1 + 18029 0.71 0.172347
Target:  5'- uAGGUGGgcgCGcacgcgccgcCCCGuCCAGCGGCGCCu- -3'
miRNA:   3'- -UCCACCa--GU----------GGGC-GGUCGUUGUGGug -5'
27419 5' -58.4 NC_005869.1 + 3766 0.72 0.154085
Target:  5'- gAGGUGG-CGCCCGgCgcuggAGCgAACACCAUg -3'
miRNA:   3'- -UCCACCaGUGGGCgG-----UCG-UUGUGGUG- -5'
27419 5' -58.4 NC_005869.1 + 21378 0.72 0.149379
Target:  5'- cGGcGGUCagggcauACgCCGCCGGCAGcCGCCGCu -3'
miRNA:   3'- uCCaCCAG-------UG-GGCGGUCGUU-GUGGUG- -5'
27419 5' -58.4 NC_005869.1 + 26183 0.74 0.109384
Target:  5'- cAGGUGGUggccguccagaGCCCGCCuGCAGCGCUg- -3'
miRNA:   3'- -UCCACCAg----------UGGGCGGuCGUUGUGGug -5'
27419 5' -58.4 NC_005869.1 + 27802 0.74 0.108126
Target:  5'- aAGGUGGUC-UUCGCCAGCcagauggacgcccGCACCACc -3'
miRNA:   3'- -UCCACCAGuGGGCGGUCGu------------UGUGGUG- -5'
27419 5' -58.4 NC_005869.1 + 17096 0.75 0.091884
Target:  5'- cGGUGGUgGCCCGgagcaCgGGCAugGCCACc -3'
miRNA:   3'- uCCACCAgUGGGC-----GgUCGUugUGGUG- -5'
27419 5' -58.4 NC_005869.1 + 16537 0.77 0.070537
Target:  5'- gAGGUGGUgguggagcCGCCCGCucCAGCAcccACGCCGCc -3'
miRNA:   3'- -UCCACCA--------GUGGGCG--GUCGU---UGUGGUG- -5'
27419 5' -58.4 NC_005869.1 + 25764 1.08 0.00026
Target:  5'- cAGGUGGUCACCCGCCAGCAACACCACc -3'
miRNA:   3'- -UCCACCAGUGGGCGGUCGUUGUGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.