miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27420 5' -50.7 NC_005869.1 + 24709 1.12 0.000862
Target:  5'- aGCAGCAGCAGAAGAAGAAGACGAGGAg -3'
miRNA:   3'- -CGUCGUCGUCUUCUUCUUCUGCUCCU- -5'
27420 5' -50.7 NC_005869.1 + 1986 0.93 0.018828
Target:  5'- cGCGGgAGCAGAAGAGGAGGAgGAGGAc -3'
miRNA:   3'- -CGUCgUCGUCUUCUUCUUCUgCUCCU- -5'
27420 5' -50.7 NC_005869.1 + 15539 0.87 0.048734
Target:  5'- gGCAgGCGGCGGAGGAGGAGGAgGAGGc -3'
miRNA:   3'- -CGU-CGUCGUCUUCUUCUUCUgCUCCu -5'
27420 5' -50.7 NC_005869.1 + 2637 0.86 0.056826
Target:  5'- cGCAGCGGCGGggGAGGAagcagcaguucacGGAgGGGGAg -3'
miRNA:   3'- -CGUCGUCGUCuuCUUCU-------------UCUgCUCCU- -5'
27420 5' -50.7 NC_005869.1 + 5716 0.84 0.082765
Target:  5'- cGUAGCGGCGGuAGuAGAGGAUGAGGAc -3'
miRNA:   3'- -CGUCGUCGUCuUCuUCUUCUGCUCCU- -5'
27420 5' -50.7 NC_005869.1 + 3722 0.84 0.082765
Target:  5'- -aGGCGGCcGAGGAGGAAGAgGAGGAg -3'
miRNA:   3'- cgUCGUCGuCUUCUUCUUCUgCUCCU- -5'
27420 5' -50.7 NC_005869.1 + 1862 0.84 0.086413
Target:  5'- aGCAGCGGCAGGAGGAGGAGGaggcagcaccucagcCGAuGGAa -3'
miRNA:   3'- -CGUCGUCGUCUUCUUCUUCU---------------GCU-CCU- -5'
27420 5' -50.7 NC_005869.1 + 15305 0.83 0.102591
Target:  5'- gGCGGCGGCAGcGGAGGAGGugGuGGu -3'
miRNA:   3'- -CGUCGUCGUCuUCUUCUUCugCuCCu -5'
27420 5' -50.7 NC_005869.1 + 14200 0.83 0.105766
Target:  5'- gGCGGCAGCAGggGGucaAGGAgGAGGAc -3'
miRNA:   3'- -CGUCGUCGUCuuCUuc-UUCUgCUCCU- -5'
27420 5' -50.7 NC_005869.1 + 4518 0.81 0.134674
Target:  5'- gGCGuGCAGCuuGGAGggGAAGGCGuGGAa -3'
miRNA:   3'- -CGU-CGUCGu-CUUCuuCUUCUGCuCCU- -5'
27420 5' -50.7 NC_005869.1 + 9842 0.8 0.151718
Target:  5'- cGCuGgaGGCGGAGGAcgaGGAGGACGAGGAg -3'
miRNA:   3'- -CGuCg-UCGUCUUCU---UCUUCUGCUCCU- -5'
27420 5' -50.7 NC_005869.1 + 3665 0.79 0.186299
Target:  5'- aGCAGCuGCAGGAGcugcGGGAGGugGuGGAg -3'
miRNA:   3'- -CGUCGuCGUCUUC----UUCUUCugCuCCU- -5'
27420 5' -50.7 NC_005869.1 + 10211 0.79 0.191773
Target:  5'- -uGGuCAGCgaGGAGGAGGAGGACGAGGc -3'
miRNA:   3'- cgUC-GUCG--UCUUCUUCUUCUGCUCCu -5'
27420 5' -50.7 NC_005869.1 + 8184 0.78 0.199673
Target:  5'- aGCGGCccugggugaagagcaGGCGGAGGggGAAGGgGAGGc -3'
miRNA:   3'- -CGUCG---------------UCGUCUUCuuCUUCUgCUCCu -5'
27420 5' -50.7 NC_005869.1 + 17846 0.78 0.208449
Target:  5'- aGCGGCGGCAGGcggcgguaccgccGGggGccGAUGAGGGg -3'
miRNA:   3'- -CGUCGUCGUCU-------------UCuuCuuCUGCUCCU- -5'
27420 5' -50.7 NC_005869.1 + 2086 0.77 0.227645
Target:  5'- -gAGCGGguGGAGAGGGGaGCGGGGAg -3'
miRNA:   3'- cgUCGUCguCUUCUUCUUcUGCUCCU- -5'
27420 5' -50.7 NC_005869.1 + 10248 0.77 0.231529
Target:  5'- gGCAGCGGCGacggcgcggcccgcGAGGAGGAagggcgaAGAUGGGGAg -3'
miRNA:   3'- -CGUCGUCGU--------------CUUCUUCU-------UCUGCUCCU- -5'
27420 5' -50.7 NC_005869.1 + 2698 0.77 0.234149
Target:  5'- cGCGG-AGCGGGAGGAGGAGAggcaGAGGGc -3'
miRNA:   3'- -CGUCgUCGUCUUCUUCUUCUg---CUCCU- -5'
27420 5' -50.7 NC_005869.1 + 10824 0.77 0.247625
Target:  5'- cGgGGgAGgAGggGGAGGAGAUGAGGGa -3'
miRNA:   3'- -CgUCgUCgUCuuCUUCUUCUGCUCCU- -5'
27420 5' -50.7 NC_005869.1 + 9556 0.77 0.247625
Target:  5'- cGCGGCGGCGuGgcGggGGAGAaGAGGGc -3'
miRNA:   3'- -CGUCGUCGU-CuuCuuCUUCUgCUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.