miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27420 5' -50.7 NC_005869.1 + 247 0.67 0.748231
Target:  5'- cGCGGaGGCGGggGAAuuccGAucGGACGAuGGGg -3'
miRNA:   3'- -CGUCgUCGUCuuCUU----CU--UCUGCU-CCU- -5'
27420 5' -50.7 NC_005869.1 + 1576 0.67 0.759347
Target:  5'- gGUAGUAGCAGAGGccAGGAGGCaGuacGGGc -3'
miRNA:   3'- -CGUCGUCGUCUUCu-UCUUCUG-Cu--CCU- -5'
27420 5' -50.7 NC_005869.1 + 1862 0.84 0.086413
Target:  5'- aGCAGCGGCAGGAGGAGGAGGaggcagcaccucagcCGAuGGAa -3'
miRNA:   3'- -CGUCGUCGUCUUCUUCUUCU---------------GCU-CCU- -5'
27420 5' -50.7 NC_005869.1 + 1941 0.68 0.679169
Target:  5'- cGCAGCGGCAGcAGuAGcAGugGuGGc -3'
miRNA:   3'- -CGUCGUCGUCuUCuUCuUCugCuCCu -5'
27420 5' -50.7 NC_005869.1 + 1986 0.93 0.018828
Target:  5'- cGCGGgAGCAGAAGAGGAGGAgGAGGAc -3'
miRNA:   3'- -CGUCgUCGUCUUCUUCUUCUgCUCCU- -5'
27420 5' -50.7 NC_005869.1 + 2086 0.77 0.227645
Target:  5'- -gAGCGGguGGAGAGGGGaGCGGGGAg -3'
miRNA:   3'- cgUCGUCguCUUCUUCUUcUGCUCCU- -5'
27420 5' -50.7 NC_005869.1 + 2637 0.86 0.056826
Target:  5'- cGCAGCGGCGGggGAGGAagcagcaguucacGGAgGGGGAg -3'
miRNA:   3'- -CGUCGUCGUCuuCUUCU-------------UCUgCUCCU- -5'
27420 5' -50.7 NC_005869.1 + 2698 0.77 0.234149
Target:  5'- cGCGG-AGCGGGAGGAGGAGAggcaGAGGGc -3'
miRNA:   3'- -CGUCgUCGUCUUCUUCUUCUg---CUCCU- -5'
27420 5' -50.7 NC_005869.1 + 3060 0.66 0.822382
Target:  5'- -aAGCGGCGGGAGGAGAacacauacAGAaacauGGAg -3'
miRNA:   3'- cgUCGUCGUCUUCUUCU--------UCUgcu--CCU- -5'
27420 5' -50.7 NC_005869.1 + 3184 0.74 0.351117
Target:  5'- cGUAGgAGguGGAGAAGggGGCGGaGAa -3'
miRNA:   3'- -CGUCgUCguCUUCUUCuuCUGCUcCU- -5'
27420 5' -50.7 NC_005869.1 + 3357 0.68 0.69089
Target:  5'- gGCAuGCAGCcccacGggGAAGcuuguGugGAGGAu -3'
miRNA:   3'- -CGU-CGUCGu----CuuCUUCuu---CugCUCCU- -5'
27420 5' -50.7 NC_005869.1 + 3554 0.75 0.316284
Target:  5'- aGCAGCAGCcGggGAcGgcGGCGAcGGGg -3'
miRNA:   3'- -CGUCGUCGuCuuCUuCuuCUGCU-CCU- -5'
27420 5' -50.7 NC_005869.1 + 3665 0.79 0.186299
Target:  5'- aGCAGCuGCAGGAGcugcGGGAGGugGuGGAg -3'
miRNA:   3'- -CGUCGuCGUCUUC----UUCUUCugCuCCU- -5'
27420 5' -50.7 NC_005869.1 + 3722 0.84 0.082765
Target:  5'- -aGGCGGCcGAGGAGGAAGAgGAGGAg -3'
miRNA:   3'- cgUCGUCGuCUUCUUCUUCUgCUCCU- -5'
27420 5' -50.7 NC_005869.1 + 3780 0.66 0.791732
Target:  5'- cGCuGgAGCgaacaccauggaAGAGGAGGAGGAUGAGa- -3'
miRNA:   3'- -CGuCgUCG------------UCUUCUUCUUCUGCUCcu -5'
27420 5' -50.7 NC_005869.1 + 3908 0.74 0.351117
Target:  5'- cGUAGgAGguGGAGAAGggGGCGGaGAa -3'
miRNA:   3'- -CGUCgUCguCUUCUUCuuCUGCUcCU- -5'
27420 5' -50.7 NC_005869.1 + 4454 0.76 0.276496
Target:  5'- cGCGGCGGgGGuucauguuguGGAGGAcGACGAGGAc -3'
miRNA:   3'- -CGUCGUCgUCu---------UCUUCUuCUGCUCCU- -5'
27420 5' -50.7 NC_005869.1 + 4518 0.81 0.134674
Target:  5'- gGCGuGCAGCuuGGAGggGAAGGCGuGGAa -3'
miRNA:   3'- -CGU-CGUCGu-CUUCuuCUUCUGCuCCU- -5'
27420 5' -50.7 NC_005869.1 + 4719 0.71 0.515268
Target:  5'- cCGGCGGCG--AGggGAAGAgUGAGGGc -3'
miRNA:   3'- cGUCGUCGUcuUCuuCUUCU-GCUCCU- -5'
27420 5' -50.7 NC_005869.1 + 4850 0.71 0.504012
Target:  5'- cCGGCGGgGGGgagaggaguuGGGAGGAGAUGAGGu -3'
miRNA:   3'- cGUCGUCgUCU----------UCUUCUUCUGCUCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.