miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27420 5' -50.7 NC_005869.1 + 33578 0.69 0.648484
Target:  5'- aGCAGCAGUcggucgugggccaugAGAGGggGcuGAUG-GGAa -3'
miRNA:   3'- -CGUCGUCG---------------UCUUCuuCuuCUGCuCCU- -5'
27420 5' -50.7 NC_005869.1 + 8381 0.71 0.515268
Target:  5'- aGguGCAGCuGGAAGAGGuuGGCcAGGGc -3'
miRNA:   3'- -CguCGUCG-UCUUCUUCuuCUGcUCCU- -5'
27420 5' -50.7 NC_005869.1 + 24140 0.71 0.549608
Target:  5'- aGCAGCGGCAGcAGGAGcccaccgaaaccGAuGACGcGGAg -3'
miRNA:   3'- -CGUCGUCGUC-UUCUU------------CUuCUGCuCCU- -5'
27420 5' -50.7 NC_005869.1 + 8347 0.7 0.572892
Target:  5'- gGUAGCcuGCAGGAGGucGGggGGCGGGc- -3'
miRNA:   3'- -CGUCGu-CGUCUUCU--UCuuCUGCUCcu -5'
27420 5' -50.7 NC_005869.1 + 11561 0.7 0.596401
Target:  5'- -aGGaGGCGGAGGAGGAGGAgcuggaaaGAGGAg -3'
miRNA:   3'- cgUCgUCGUCUUCUUCUUCUg-------CUCCU- -5'
27420 5' -50.7 NC_005869.1 + 7405 0.69 0.62005
Target:  5'- cGCGGC-GCGGGc--GGAAGGCGGGGu -3'
miRNA:   3'- -CGUCGuCGUCUucuUCUUCUGCUCCu -5'
27420 5' -50.7 NC_005869.1 + 11510 0.69 0.631898
Target:  5'- -gGGC-GCuGGccGggGAGGGCGAGGAg -3'
miRNA:   3'- cgUCGuCG-UCuuCuuCUUCUGCUCCU- -5'
27420 5' -50.7 NC_005869.1 + 6674 0.69 0.631898
Target:  5'- aGCGGCGggcggccagggcGCGGucGAAGggGuuGAGGGg -3'
miRNA:   3'- -CGUCGU------------CGUCuuCUUCuuCugCUCCU- -5'
27420 5' -50.7 NC_005869.1 + 14541 0.69 0.631898
Target:  5'- cGCAGCuaccacGUGGgcGAGGAccccgAGGCGGGGGa -3'
miRNA:   3'- -CGUCGu-----CGUCuuCUUCU-----UCUGCUCCU- -5'
27420 5' -50.7 NC_005869.1 + 4850 0.71 0.504012
Target:  5'- cCGGCGGgGGGgagaggaguuGGGAGGAGAUGAGGu -3'
miRNA:   3'- cGUCGUCgUCU----------UCUUCUUCUGCUCCu -5'
27420 5' -50.7 NC_005869.1 + 3554 0.75 0.316284
Target:  5'- aGCAGCAGCcGggGAcGgcGGCGAcGGGg -3'
miRNA:   3'- -CGUCGUCGuCuuCUuCuuCUGCU-CCU- -5'
27420 5' -50.7 NC_005869.1 + 4454 0.76 0.276496
Target:  5'- cGCGGCGGgGGuucauguuguGGAGGAcGACGAGGAc -3'
miRNA:   3'- -CGUCGUCgUCu---------UCUUCUuCUGCUCCU- -5'
27420 5' -50.7 NC_005869.1 + 3722 0.84 0.082765
Target:  5'- -aGGCGGCcGAGGAGGAAGAgGAGGAg -3'
miRNA:   3'- cgUCGUCGuCUUCUUCUUCUgCUCCU- -5'
27420 5' -50.7 NC_005869.1 + 14200 0.83 0.105766
Target:  5'- gGCGGCAGCAGggGGucaAGGAgGAGGAc -3'
miRNA:   3'- -CGUCGUCGUCuuCUuc-UUCUgCUCCU- -5'
27420 5' -50.7 NC_005869.1 + 4518 0.81 0.134674
Target:  5'- gGCGuGCAGCuuGGAGggGAAGGCGuGGAa -3'
miRNA:   3'- -CGU-CGUCGu-CUUCuuCUUCUGCuCCU- -5'
27420 5' -50.7 NC_005869.1 + 3665 0.79 0.186299
Target:  5'- aGCAGCuGCAGGAGcugcGGGAGGugGuGGAg -3'
miRNA:   3'- -CGUCGuCGUCUUC----UUCUUCugCuCCU- -5'
27420 5' -50.7 NC_005869.1 + 8184 0.78 0.199673
Target:  5'- aGCGGCccugggugaagagcaGGCGGAGGggGAAGGgGAGGc -3'
miRNA:   3'- -CGUCG---------------UCGUCUUCuuCUUCUgCUCCu -5'
27420 5' -50.7 NC_005869.1 + 17846 0.78 0.208449
Target:  5'- aGCGGCGGCAGGcggcgguaccgccGGggGccGAUGAGGGg -3'
miRNA:   3'- -CGUCGUCGUCU-------------UCuuCuuCUGCUCCU- -5'
27420 5' -50.7 NC_005869.1 + 2086 0.77 0.227645
Target:  5'- -gAGCGGguGGAGAGGGGaGCGGGGAg -3'
miRNA:   3'- cgUCGUCguCUUCUUCUUcUGCUCCU- -5'
27420 5' -50.7 NC_005869.1 + 10824 0.77 0.247625
Target:  5'- cGgGGgAGgAGggGGAGGAGAUGAGGGa -3'
miRNA:   3'- -CgUCgUCgUCuuCUUCUUCUGCUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.