miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27441 3' -62.8 NC_005869.1 + 15365 0.66 0.261692
Target:  5'- gCGCCACCCGCCgCCGGc--GCcGCCa- -3'
miRNA:   3'- -GUGGUGGGUGG-GGCCucuCGcUGGga -5'
27441 3' -62.8 NC_005869.1 + 5429 0.66 0.261692
Target:  5'- gCACCAgCCGCCUCaGccucaAGAG-GACCCUg -3'
miRNA:   3'- -GUGGUgGGUGGGGcC-----UCUCgCUGGGA- -5'
27441 3' -62.8 NC_005869.1 + 16726 0.66 0.261692
Target:  5'- cCGCCGCCCGCUCCaGcgccGCGGCCg- -3'
miRNA:   3'- -GUGGUGGGUGGGGcCucu-CGCUGGga -5'
27441 3' -62.8 NC_005869.1 + 23068 0.66 0.261692
Target:  5'- gCGuuGCCCAUCCgGGGGuAGCaGGCCUUc -3'
miRNA:   3'- -GUggUGGGUGGGgCCUC-UCG-CUGGGA- -5'
27441 3' -62.8 NC_005869.1 + 2616 0.66 0.261033
Target:  5'- gCACCACCC-CCCCGGcGuuCGccguuauuaccgaGCCCa -3'
miRNA:   3'- -GUGGUGGGuGGGGCCuCucGC-------------UGGGa -5'
27441 3' -62.8 NC_005869.1 + 17587 0.66 0.255164
Target:  5'- -uCC-CCCGCCCuCGGcugccgaGGCGGCCCa -3'
miRNA:   3'- guGGuGGGUGGG-GCCuc-----UCGCUGGGa -5'
27441 3' -62.8 NC_005869.1 + 16570 0.66 0.255164
Target:  5'- aCGCCGCCCcuaGCCCCGc--GGCGGUCCa -3'
miRNA:   3'- -GUGGUGGG---UGGGGCcucUCGCUGGGa -5'
27441 3' -62.8 NC_005869.1 + 10623 0.66 0.255164
Target:  5'- aGCCGCCggccggCGCCCUGGgcgcggagGGGGCGACgCg -3'
miRNA:   3'- gUGGUGG------GUGGGGCC--------UCUCGCUGgGa -5'
27441 3' -62.8 NC_005869.1 + 24405 0.66 0.248769
Target:  5'- gGCCGCCCccggcgcaGCCgCGGAGgccgccgaGGCG-CCCUc -3'
miRNA:   3'- gUGGUGGG--------UGGgGCCUC--------UCGCuGGGA- -5'
27441 3' -62.8 NC_005869.1 + 20904 0.66 0.248137
Target:  5'- aCACCGCCucCACCCUGGAG-GCcaugcugcgcaacGACaCCa -3'
miRNA:   3'- -GUGGUGG--GUGGGGCCUCuCG-------------CUG-GGa -5'
27441 3' -62.8 NC_005869.1 + 28497 0.66 0.242508
Target:  5'- aCACCACCUccgucuucaugGCCCUGGuGGGCcucAUCCUc -3'
miRNA:   3'- -GUGGUGGG-----------UGGGGCCuCUCGc--UGGGA- -5'
27441 3' -62.8 NC_005869.1 + 2130 0.66 0.236379
Target:  5'- -uCCACCCGcucCCCCGGGccggcGGCGAUCUa -3'
miRNA:   3'- guGGUGGGU---GGGGCCUc----UCGCUGGGa -5'
27441 3' -62.8 NC_005869.1 + 13050 0.66 0.236379
Target:  5'- uCACCcCCCugCCCcugaccgaGGAGccgcccucGCGGCCCUc -3'
miRNA:   3'- -GUGGuGGGugGGG--------CCUCu-------CGCUGGGA- -5'
27441 3' -62.8 NC_005869.1 + 265 0.66 0.236379
Target:  5'- cCGCCGcucggcCCCGCCCCGcGGAG-GACCg- -3'
miRNA:   3'- -GUGGU------GGGUGGGGCcUCUCgCUGGga -5'
27441 3' -62.8 NC_005869.1 + 6720 0.66 0.23038
Target:  5'- gGCCGCCCGCCgCUGGcAGGaccgccucGaCGGCCCc -3'
miRNA:   3'- gUGGUGGGUGG-GGCC-UCU--------C-GCUGGGa -5'
27441 3' -62.8 NC_005869.1 + 6066 0.66 0.23038
Target:  5'- gGCCACgCACCCCGGcccGCG-CCUUu -3'
miRNA:   3'- gUGGUGgGUGGGGCCucuCGCuGGGA- -5'
27441 3' -62.8 NC_005869.1 + 15610 0.66 0.23038
Target:  5'- gCGCCGgCCAUCCUGGGGGuGCG-CCg- -3'
miRNA:   3'- -GUGGUgGGUGGGGCCUCU-CGCuGGga -5'
27441 3' -62.8 NC_005869.1 + 24460 0.66 0.23038
Target:  5'- aGCCGCCg--CCUGGA-AGCGGCCCUc -3'
miRNA:   3'- gUGGUGGgugGGGCCUcUCGCUGGGA- -5'
27441 3' -62.8 NC_005869.1 + 21111 0.66 0.23038
Target:  5'- aGCCGCgugaagcuCCAgCCgCGGAaGGCGGCCCa -3'
miRNA:   3'- gUGGUG--------GGUgGG-GCCUcUCGCUGGGa -5'
27441 3' -62.8 NC_005869.1 + 15483 0.67 0.226843
Target:  5'- gGCCACCgGguCCCCggugacggccacggaGGAGAcgcgcGCGGCCCUc -3'
miRNA:   3'- gUGGUGGgU--GGGG---------------CCUCU-----CGCUGGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.