Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27443 | 3' | -54.3 | NC_005869.1 | + | 30235 | 0.67 | 0.605271 |
Target: 5'- cGUGGCgGGGACGGugaguUgUCcuUCGggGCa -3' miRNA: 3'- -CGCCGgUCCUGCU-----AgAGu-AGCuuCGg -5' |
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27443 | 3' | -54.3 | NC_005869.1 | + | 27833 | 0.67 | 0.560206 |
Target: 5'- aGCGGUUAGGgcacuggcgGCGGUgCUgGUCGAggagcucccgcAGCCg -3' miRNA: 3'- -CGCCGGUCC---------UGCUA-GAgUAGCU-----------UCGG- -5' |
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27443 | 3' | -54.3 | NC_005869.1 | + | 27371 | 0.66 | 0.65186 |
Target: 5'- cGCGGCaggugcagguggguGGGCGGUUgcgUCAUCuGAGGCa -3' miRNA: 3'- -CGCCGgu------------CCUGCUAG---AGUAG-CUUCGg -5' |
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27443 | 3' | -54.3 | NC_005869.1 | + | 27321 | 0.68 | 0.527019 |
Target: 5'- gGCgGGCCAGGACGGgggauUUUgGaCGggGCg -3' miRNA: 3'- -CG-CCGGUCCUGCU-----AGAgUaGCuuCGg -5' |
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27443 | 3' | -54.3 | NC_005869.1 | + | 26872 | 0.74 | 0.256363 |
Target: 5'- gGCGGCCAGGACGccCUCAaaaUCaGGAaCCg -3' miRNA: 3'- -CGCCGGUCCUGCuaGAGU---AG-CUUcGG- -5' |
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27443 | 3' | -54.3 | NC_005869.1 | + | 25505 | 0.7 | 0.413098 |
Target: 5'- cGCGGCgAGGuccugcGCGAUagugcgCUCAUCaAAGCCc -3' miRNA: 3'- -CGCCGgUCC------UGCUA------GAGUAGcUUCGG- -5' |
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27443 | 3' | -54.3 | NC_005869.1 | + | 23044 | 0.66 | 0.662069 |
Target: 5'- aGCGGCaucagCAGGuGCG-UCUCcgCGuuGCCc -3' miRNA: 3'- -CGCCG-----GUCC-UGCuAGAGuaGCuuCGG- -5' |
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27443 | 3' | -54.3 | NC_005869.1 | + | 22435 | 0.67 | 0.605271 |
Target: 5'- -gGGCU-GGACG-UCggCGUCGAagAGCCg -3' miRNA: 3'- cgCCGGuCCUGCuAGa-GUAGCU--UCGG- -5' |
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27443 | 3' | -54.3 | NC_005869.1 | + | 21811 | 0.67 | 0.587163 |
Target: 5'- uGCGGCguGcaccagccgcaccgaGGCG---UCAUCGAGGCCg -3' miRNA: 3'- -CGCCGguC---------------CUGCuagAGUAGCUUCGG- -5' |
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27443 | 3' | -54.3 | NC_005869.1 | + | 18838 | 0.67 | 0.616623 |
Target: 5'- cGCGGCC-GGACGccgacgCAcaGGAGCCg -3' miRNA: 3'- -CGCCGGuCCUGCuaga--GUagCUUCGG- -5' |
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27443 | 3' | -54.3 | NC_005869.1 | + | 18756 | 0.74 | 0.236598 |
Target: 5'- gGCGGCgGgGGGCGcAUCUUAUUGuGGGCCa -3' miRNA: 3'- -CGCCGgU-CCUGC-UAGAGUAGC-UUCGG- -5' |
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27443 | 3' | -54.3 | NC_005869.1 | + | 17109 | 0.68 | 0.516117 |
Target: 5'- gGUGGCCGGGcCGggCUCcgUG-AGCa -3' miRNA: 3'- -CGCCGGUCCuGCuaGAGuaGCuUCGg -5' |
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27443 | 3' | -54.3 | NC_005869.1 | + | 17016 | 0.69 | 0.451831 |
Target: 5'- cCGGCCAGGcagccccgcACGGUaucccugcccgugCUCA-CGGAGCCc -3' miRNA: 3'- cGCCGGUCC---------UGCUA-------------GAGUaGCUUCGG- -5' |
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27443 | 3' | -54.3 | NC_005869.1 | + | 16219 | 0.67 | 0.605271 |
Target: 5'- cGCGGCCGGaccaccaaGCGcUCUUAUgaCGAGGUCg -3' miRNA: 3'- -CGCCGGUCc-------UGCuAGAGUA--GCUUCGG- -5' |
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27443 | 3' | -54.3 | NC_005869.1 | + | 15843 | 0.67 | 0.582651 |
Target: 5'- aUGGCCAuGGcCGAgcgCGUCGguGCCg -3' miRNA: 3'- cGCCGGU-CCuGCUagaGUAGCuuCGG- -5' |
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27443 | 3' | -54.3 | NC_005869.1 | + | 15412 | 0.67 | 0.580397 |
Target: 5'- gGCGGCgGGuggcgccGGCGAUCgCGUUGAccacgucGGCCa -3' miRNA: 3'- -CGCCGgUC-------CUGCUAGaGUAGCU-------UCGG- -5' |
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27443 | 3' | -54.3 | NC_005869.1 | + | 14944 | 0.66 | 0.62799 |
Target: 5'- gGCgGGCgCAGGAgGAUCUgGUUcuccggGAAGCg -3' miRNA: 3'- -CG-CCG-GUCCUgCUAGAgUAG------CUUCGg -5' |
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27443 | 3' | -54.3 | NC_005869.1 | + | 13497 | 0.67 | 0.582651 |
Target: 5'- gGC-GCCAGGAcCGGUUcuuUCGcuUCGAAGCg -3' miRNA: 3'- -CGcCGGUCCU-GCUAG---AGU--AGCUUCGg -5' |
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27443 | 3' | -54.3 | NC_005869.1 | + | 13361 | 0.7 | 0.431715 |
Target: 5'- gGCGGCCGGcGGCGGcgccugggugCUCGUUcacauccuugggaGggGCCa -3' miRNA: 3'- -CGCCGGUC-CUGCUa---------GAGUAG-------------CuuCGG- -5' |
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27443 | 3' | -54.3 | NC_005869.1 | + | 12750 | 0.72 | 0.307712 |
Target: 5'- aCGGCCAcGGGCGccCUgGaCGAGGCCa -3' miRNA: 3'- cGCCGGU-CCUGCuaGAgUaGCUUCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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