miRNA display CGI


Results 1 - 20 of 51 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27445 3' -56.3 NC_005869.1 + 12334 1.1 0.000319
Target:  5'- uCAACCAGGCCAUGGAGAACCUGCGGCc -3'
miRNA:   3'- -GUUGGUCCGGUACCUCUUGGACGCCG- -5'
27445 3' -56.3 NC_005869.1 + 21259 0.8 0.056264
Target:  5'- cCGGCCAGGCCAcGGAGGagucgaacuggauGCUgaUGCGGCg -3'
miRNA:   3'- -GUUGGUCCGGUaCCUCU-------------UGG--ACGCCG- -5'
27445 3' -56.3 NC_005869.1 + 30008 0.77 0.09647
Target:  5'- uUAACCAGGC--UGGAcuGAGuCCUGCGGCu -3'
miRNA:   3'- -GUUGGUCCGguACCU--CUU-GGACGCCG- -5'
27445 3' -56.3 NC_005869.1 + 30731 0.77 0.09647
Target:  5'- uUAACCAGGC--UGGAcuGAGuCCUGCGGCu -3'
miRNA:   3'- -GUUGGUCCGguACCU--CUU-GGACGCCG- -5'
27445 3' -56.3 NC_005869.1 + 13137 0.75 0.129146
Target:  5'- aGGCCGGG--GUGGAGGGCCgcgaggGCGGCu -3'
miRNA:   3'- gUUGGUCCggUACCUCUUGGa-----CGCCG- -5'
27445 3' -56.3 NC_005869.1 + 12195 0.75 0.136808
Target:  5'- gAGCgGGGCCA-GGAGAgcuACCUGgGGUu -3'
miRNA:   3'- gUUGgUCCGGUaCCUCU---UGGACgCCG- -5'
27445 3' -56.3 NC_005869.1 + 9181 0.74 0.153398
Target:  5'- -uACCGGGUCAUGcagcgccucGAGGACCUG-GGCg -3'
miRNA:   3'- guUGGUCCGGUAC---------CUCUUGGACgCCG- -5'
27445 3' -56.3 NC_005869.1 + 7492 0.72 0.208741
Target:  5'- uGACCAGGaaGgagGGGGGcACCUcGCGGCg -3'
miRNA:   3'- gUUGGUCCggUa--CCUCU-UGGA-CGCCG- -5'
27445 3' -56.3 NC_005869.1 + 4630 0.71 0.259159
Target:  5'- uCGACgAGuG-CAUGGAGGACCU-CGGCg -3'
miRNA:   3'- -GUUGgUC-CgGUACCUCUUGGAcGCCG- -5'
27445 3' -56.3 NC_005869.1 + 13663 0.71 0.266118
Target:  5'- aCAACCAuGGCCGUGGugaguuGGACCgggaGgGGUu -3'
miRNA:   3'- -GUUGGU-CCGGUACCu-----CUUGGa---CgCCG- -5'
27445 3' -56.3 NC_005869.1 + 12574 0.7 0.2879
Target:  5'- uCAGCCGGGCguUGGgcgacgAGGACgacGCGGCg -3'
miRNA:   3'- -GUUGGUCCGguACC------UCUUGga-CGCCG- -5'
27445 3' -56.3 NC_005869.1 + 14860 0.7 0.294703
Target:  5'- aCGGCCuggguguuguagaAGGCCcgGGAGcGCa-GCGGCa -3'
miRNA:   3'- -GUUGG-------------UCCGGuaCCUCuUGgaCGCCG- -5'
27445 3' -56.3 NC_005869.1 + 18859 0.7 0.303187
Target:  5'- -cGCCGGaGCCGcGGccGGAGCC-GCGGCc -3'
miRNA:   3'- guUGGUC-CGGUaCC--UCUUGGaCGCCG- -5'
27445 3' -56.3 NC_005869.1 + 15512 0.69 0.311061
Target:  5'- gCAugCAGaCCAcGGGGGACCccGUGGCg -3'
miRNA:   3'- -GUugGUCcGGUaCCUCUUGGa-CGCCG- -5'
27445 3' -56.3 NC_005869.1 + 5767 0.69 0.311061
Target:  5'- gGGCCGgucGGCgAUGGGGGugCcGCGGUc -3'
miRNA:   3'- gUUGGU---CCGgUACCUCUugGaCGCCG- -5'
27445 3' -56.3 NC_005869.1 + 9879 0.69 0.311061
Target:  5'- uCGGCCGcuGCCAgcaGGAG-GCCUGgGGCa -3'
miRNA:   3'- -GUUGGUc-CGGUa--CCUCuUGGACgCCG- -5'
27445 3' -56.3 NC_005869.1 + 10762 0.69 0.326448
Target:  5'- gCAGCUcaagcgagAGGCCAUGGAGGccuauguGCCga-GGCa -3'
miRNA:   3'- -GUUGG--------UCCGGUACCUCU-------UGGacgCCG- -5'
27445 3' -56.3 NC_005869.1 + 18340 0.69 0.333093
Target:  5'- cCAACCAGGCCgucucccacgccGUGGAccgccggugcaacaGcAGCagCUGCGGCa -3'
miRNA:   3'- -GUUGGUCCGG------------UACCU--------------C-UUG--GACGCCG- -5'
27445 3' -56.3 NC_005869.1 + 4975 0.69 0.352748
Target:  5'- cCAGCCGGGgUGaGGAGGGCaUGCaGGCg -3'
miRNA:   3'- -GUUGGUCCgGUaCCUCUUGgACG-CCG- -5'
27445 3' -56.3 NC_005869.1 + 20391 0.69 0.356249
Target:  5'- gCAACCucaacGCCAUGGAGAucaaucucacggccaACCUcUGGCg -3'
miRNA:   3'- -GUUGGuc---CGGUACCUCU---------------UGGAcGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.