Results 1 - 20 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27445 | 3' | -56.3 | NC_005869.1 | + | 23718 | 0.67 | 0.447318 |
Target: 5'- -cGCCGGGCUcgGGGucACCgggcGCGGg -3' miRNA: 3'- guUGGUCCGGuaCCUcuUGGa---CGCCg -5' |
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27445 | 3' | -56.3 | NC_005869.1 | + | 10690 | 0.68 | 0.379595 |
Target: 5'- gCGGCCGcGCgAggagggGGAGGGCCUggcGCGGCu -3' miRNA: 3'- -GUUGGUcCGgUa-----CCUCUUGGA---CGCCG- -5' |
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27445 | 3' | -56.3 | NC_005869.1 | + | 22993 | 0.68 | 0.388843 |
Target: 5'- -uGCCGGcCCAgcaGGGGcACCUgGCGGCa -3' miRNA: 3'- guUGGUCcGGUa--CCUCuUGGA-CGCCG- -5' |
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27445 | 3' | -56.3 | NC_005869.1 | + | 8315 | 0.68 | 0.395404 |
Target: 5'- gCGGCgCGGGCCAgcuccaccgcggucUGGGGGguaGCCUGCaggaggucggggGGCg -3' miRNA: 3'- -GUUG-GUCCGGU--------------ACCUCU---UGGACG------------CCG- -5' |
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27445 | 3' | -56.3 | NC_005869.1 | + | 6645 | 0.67 | 0.416483 |
Target: 5'- gGGCUcgGGGCCGUcGAGGcgguccuGCCaGCGGCg -3' miRNA: 3'- gUUGG--UCCGGUAcCUCU-------UGGaCGCCG- -5' |
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27445 | 3' | -56.3 | NC_005869.1 | + | 1944 | 0.67 | 0.417457 |
Target: 5'- gCAGCgGGGCCG-GGAugcgGGACCagGUGGUg -3' miRNA: 3'- -GUUGgUCCGGUaCCU----CUUGGa-CGCCG- -5' |
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27445 | 3' | -56.3 | NC_005869.1 | + | 12767 | 0.67 | 0.427276 |
Target: 5'- gGACgAGGCCAgccgcaaccUGGAGcccAGCUUcuacGCGGCg -3' miRNA: 3'- gUUGgUCCGGU---------ACCUC---UUGGA----CGCCG- -5' |
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27445 | 3' | -56.3 | NC_005869.1 | + | 22348 | 0.67 | 0.437231 |
Target: 5'- gGACCugguggAGGgCGUGGAcAACgaGCGGCu -3' miRNA: 3'- gUUGG------UCCgGUACCUcUUGgaCGCCG- -5' |
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27445 | 3' | -56.3 | NC_005869.1 | + | 7999 | 0.67 | 0.447318 |
Target: 5'- gCGGCgGGuGCCcucgGGGGAGCCgaUGgGGCg -3' miRNA: 3'- -GUUGgUC-CGGua--CCUCUUGG--ACgCCG- -5' |
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27445 | 3' | -56.3 | NC_005869.1 | + | 10819 | 0.68 | 0.379595 |
Target: 5'- gCGACCGGGggAggagGGGGAggagaugagggACCUGCGGUu -3' miRNA: 3'- -GUUGGUCCggUa---CCUCU-----------UGGACGCCG- -5' |
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27445 | 3' | -56.3 | NC_005869.1 | + | 8993 | 0.68 | 0.370495 |
Target: 5'- -cACCAGGCgGUugaaGGGcGCCUGCaGGCg -3' miRNA: 3'- guUGGUCCGgUAc---CUCuUGGACG-CCG- -5' |
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27445 | 3' | -56.3 | NC_005869.1 | + | 20391 | 0.69 | 0.356249 |
Target: 5'- gCAACCucaacGCCAUGGAGAucaaucucacggccaACCUcUGGCg -3' miRNA: 3'- -GUUGGuc---CGGUACCUCU---------------UGGAcGCCG- -5' |
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27445 | 3' | -56.3 | NC_005869.1 | + | 12195 | 0.75 | 0.136808 |
Target: 5'- gAGCgGGGCCA-GGAGAgcuACCUGgGGUu -3' miRNA: 3'- gUUGgUCCGGUaCCUCU---UGGACgCCG- -5' |
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27445 | 3' | -56.3 | NC_005869.1 | + | 7492 | 0.72 | 0.208741 |
Target: 5'- uGACCAGGaaGgagGGGGGcACCUcGCGGCg -3' miRNA: 3'- gUUGGUCCggUa--CCUCU-UGGA-CGCCG- -5' |
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27445 | 3' | -56.3 | NC_005869.1 | + | 12574 | 0.7 | 0.2879 |
Target: 5'- uCAGCCGGGCguUGGgcgacgAGGACgacGCGGCg -3' miRNA: 3'- -GUUGGUCCGguACC------UCUUGga-CGCCG- -5' |
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27445 | 3' | -56.3 | NC_005869.1 | + | 5767 | 0.69 | 0.311061 |
Target: 5'- gGGCCGgucGGCgAUGGGGGugCcGCGGUc -3' miRNA: 3'- gUUGGU---CCGgUACCUCUugGaCGCCG- -5' |
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27445 | 3' | -56.3 | NC_005869.1 | + | 15512 | 0.69 | 0.311061 |
Target: 5'- gCAugCAGaCCAcGGGGGACCccGUGGCg -3' miRNA: 3'- -GUugGUCcGGUaCCUCUUGGa-CGCCG- -5' |
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27445 | 3' | -56.3 | NC_005869.1 | + | 10762 | 0.69 | 0.326448 |
Target: 5'- gCAGCUcaagcgagAGGCCAUGGAGGccuauguGCCga-GGCa -3' miRNA: 3'- -GUUGG--------UCCGGUACCUCU-------UGGacgCCG- -5' |
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27445 | 3' | -56.3 | NC_005869.1 | + | 18340 | 0.69 | 0.333093 |
Target: 5'- cCAACCAGGCCgucucccacgccGUGGAccgccggugcaacaGcAGCagCUGCGGCa -3' miRNA: 3'- -GUUGGUCCGG------------UACCU--------------C-UUG--GACGCCG- -5' |
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27445 | 3' | -56.3 | NC_005869.1 | + | 4975 | 0.69 | 0.352748 |
Target: 5'- cCAGCCGGGgUGaGGAGGGCaUGCaGGCg -3' miRNA: 3'- -GUUGGUCCgGUaCCUCUUGgACG-CCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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