miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27445 3' -56.3 NC_005869.1 + 1944 0.67 0.417457
Target:  5'- gCAGCgGGGCCG-GGAugcgGGACCagGUGGUg -3'
miRNA:   3'- -GUUGgUCCGGUaCCU----CUUGGa-CGCCG- -5'
27445 3' -56.3 NC_005869.1 + 2070 0.66 0.478329
Target:  5'- -cGCCGccGGCCcgGGGGAGCggGUGGa -3'
miRNA:   3'- guUGGU--CCGGuaCCUCUUGgaCGCCg -5'
27445 3' -56.3 NC_005869.1 + 3642 0.66 0.478329
Target:  5'- ---gCAGGCgcUGGcGGAgCUGCGGCa -3'
miRNA:   3'- guugGUCCGguACCuCUUgGACGCCG- -5'
27445 3' -56.3 NC_005869.1 + 4630 0.71 0.259159
Target:  5'- uCGACgAGuG-CAUGGAGGACCU-CGGCg -3'
miRNA:   3'- -GUUGgUC-CgGUACCUCUUGGAcGCCG- -5'
27445 3' -56.3 NC_005869.1 + 4975 0.69 0.352748
Target:  5'- cCAGCCGGGgUGaGGAGGGCaUGCaGGCg -3'
miRNA:   3'- -GUUGGUCCgGUaCCUCUUGgACG-CCG- -5'
27445 3' -56.3 NC_005869.1 + 5622 0.66 0.478329
Target:  5'- cCAGCCAGGUgAgcUGGGGGuUCUGgGGa -3'
miRNA:   3'- -GUUGGUCCGgU--ACCUCUuGGACgCCg -5'
27445 3' -56.3 NC_005869.1 + 5767 0.69 0.311061
Target:  5'- gGGCCGgucGGCgAUGGGGGugCcGCGGUc -3'
miRNA:   3'- gUUGGU---CCGgUACCUCUugGaCGCCG- -5'
27445 3' -56.3 NC_005869.1 + 6453 0.66 0.497435
Target:  5'- cCAGCCAcGGUUGUGGAGGgugACCacguccacggagGUGGCu -3'
miRNA:   3'- -GUUGGU-CCGGUACCUCU---UGGa-----------CGCCG- -5'
27445 3' -56.3 NC_005869.1 + 6645 0.67 0.416483
Target:  5'- gGGCUcgGGGCCGUcGAGGcgguccuGCCaGCGGCg -3'
miRNA:   3'- gUUGG--UCCGGUAcCUCU-------UGGaCGCCG- -5'
27445 3' -56.3 NC_005869.1 + 7492 0.72 0.208741
Target:  5'- uGACCAGGaaGgagGGGGGcACCUcGCGGCg -3'
miRNA:   3'- gUUGGUCCggUa--CCUCU-UGGA-CGCCG- -5'
27445 3' -56.3 NC_005869.1 + 7999 0.67 0.447318
Target:  5'- gCGGCgGGuGCCcucgGGGGAGCCgaUGgGGCg -3'
miRNA:   3'- -GUUGgUC-CGGua--CCUCUUGG--ACgCCG- -5'
27445 3' -56.3 NC_005869.1 + 8315 0.68 0.395404
Target:  5'- gCGGCgCGGGCCAgcuccaccgcggucUGGGGGguaGCCUGCaggaggucggggGGCg -3'
miRNA:   3'- -GUUG-GUCCGGU--------------ACCUCU---UGGACG------------CCG- -5'
27445 3' -56.3 NC_005869.1 + 8993 0.68 0.370495
Target:  5'- -cACCAGGCgGUugaaGGGcGCCUGCaGGCg -3'
miRNA:   3'- guUGGUCCGgUAc---CUCuUGGACG-CCG- -5'
27445 3' -56.3 NC_005869.1 + 9181 0.74 0.153398
Target:  5'- -uACCGGGUCAUGcagcgccucGAGGACCUG-GGCg -3'
miRNA:   3'- guUGGUCCGGUAC---------CUCUUGGACgCCG- -5'
27445 3' -56.3 NC_005869.1 + 9879 0.69 0.311061
Target:  5'- uCGGCCGcuGCCAgcaGGAG-GCCUGgGGCa -3'
miRNA:   3'- -GUUGGUc-CGGUa--CCUCuUGGACgCCG- -5'
27445 3' -56.3 NC_005869.1 + 9948 0.66 0.478329
Target:  5'- uCGGCCAccacgcgcucGGCCA-GGAuGGCCUGCGcauGCg -3'
miRNA:   3'- -GUUGGU----------CCGGUaCCUcUUGGACGC---CG- -5'
27445 3' -56.3 NC_005869.1 + 10690 0.68 0.379595
Target:  5'- gCGGCCGcGCgAggagggGGAGGGCCUggcGCGGCu -3'
miRNA:   3'- -GUUGGUcCGgUa-----CCUCUUGGA---CGCCG- -5'
27445 3' -56.3 NC_005869.1 + 10762 0.69 0.326448
Target:  5'- gCAGCUcaagcgagAGGCCAUGGAGGccuauguGCCga-GGCa -3'
miRNA:   3'- -GUUGG--------UCCGGUACCUCU-------UGGacgCCG- -5'
27445 3' -56.3 NC_005869.1 + 10819 0.68 0.379595
Target:  5'- gCGACCGGGggAggagGGGGAggagaugagggACCUGCGGUu -3'
miRNA:   3'- -GUUGGUCCggUa---CCUCU-----------UGGACGCCG- -5'
27445 3' -56.3 NC_005869.1 + 11061 0.66 0.510361
Target:  5'- gAGCCGGGacgaggugaCCAUGGGacuGAugcACCUGUGGg -3'
miRNA:   3'- gUUGGUCC---------GGUACCU---CU---UGGACGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.