miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27456 3' -55.9 NC_005869.1 + 20637 1.15 0.000191
Target:  5'- aCCACCGCAACUACGGCCUGCGCUACCg -3'
miRNA:   3'- -GGUGGCGUUGAUGCCGGACGCGAUGG- -5'
27456 3' -55.9 NC_005869.1 + 17620 0.83 0.041257
Target:  5'- aCCGCCGCuGCggGCGGgCgGCGCUGCCa -3'
miRNA:   3'- -GGUGGCGuUGa-UGCCgGaCGCGAUGG- -5'
27456 3' -55.9 NC_005869.1 + 16651 0.83 0.043676
Target:  5'- gCGCCGCAGCUcagcGCGGCCgcgGCGCUggagcgggcggcgGCCg -3'
miRNA:   3'- gGUGGCGUUGA----UGCCGGa--CGCGA-------------UGG- -5'
27456 3' -55.9 NC_005869.1 + 23083 0.81 0.059047
Target:  5'- gCCGCUgguguGCGACUGCGGCUgGgGCUGCCg -3'
miRNA:   3'- -GGUGG-----CGUUGAUGCCGGaCgCGAUGG- -5'
27456 3' -55.9 NC_005869.1 + 32098 0.76 0.126307
Target:  5'- aCCACUGCuACUGCuGCCgcUGCGCcACCa -3'
miRNA:   3'- -GGUGGCGuUGAUGcCGG--ACGCGaUGG- -5'
27456 3' -55.9 NC_005869.1 + 7671 0.74 0.172347
Target:  5'- cCCAgCUGCGGCgccGCcGCCUGCGCggGCCg -3'
miRNA:   3'- -GGU-GGCGUUGa--UGcCGGACGCGa-UGG- -5'
27456 3' -55.9 NC_005869.1 + 20119 0.74 0.172347
Target:  5'- aCCACCGCGuugaGCUGagaGGCCUGaccgGCUAgCa -3'
miRNA:   3'- -GGUGGCGU----UGAUg--CCGGACg---CGAUgG- -5'
27456 3' -55.9 NC_005869.1 + 26828 0.74 0.172347
Target:  5'- gCCGCCGCuGCUGCGGCCUuccuggagauCGCUGg- -3'
miRNA:   3'- -GGUGGCGuUGAUGCCGGAc---------GCGAUgg -5'
27456 3' -55.9 NC_005869.1 + 31414 0.74 0.177206
Target:  5'- cCCGCCGCuGCgccccgAUGGCCUcCGCcGCCa -3'
miRNA:   3'- -GGUGGCGuUGa-----UGCCGGAcGCGaUGG- -5'
27456 3' -55.9 NC_005869.1 + 24498 0.74 0.182185
Target:  5'- gCCGCCGCGGCgccaggagaACGGaaCCUGCGCcccggACCc -3'
miRNA:   3'- -GGUGGCGUUGa--------UGCC--GGACGCGa----UGG- -5'
27456 3' -55.9 NC_005869.1 + 23436 0.74 0.197331
Target:  5'- gCACCGCAgcggcucggagggGCUGCacuGCCUGCacggGCUGCCc -3'
miRNA:   3'- gGUGGCGU-------------UGAUGc--CGGACG----CGAUGG- -5'
27456 3' -55.9 NC_005869.1 + 23873 0.74 0.197873
Target:  5'- uCCGCCGCucCUGCacgggcggagaGGCCgcGCGCUugCg -3'
miRNA:   3'- -GGUGGCGuuGAUG-----------CCGGa-CGCGAugG- -5'
27456 3' -55.9 NC_005869.1 + 3700 0.73 0.203358
Target:  5'- gCUGCCGCAGCU-CcGCCaGCGcCUGCCg -3'
miRNA:   3'- -GGUGGCGUUGAuGcCGGaCGC-GAUGG- -5'
27456 3' -55.9 NC_005869.1 + 9954 0.73 0.220611
Target:  5'- aCCACgCGCucgGCcaggAUGGCCUGCGCaUGCg -3'
miRNA:   3'- -GGUG-GCGu--UGa---UGCCGGACGCG-AUGg -5'
27456 3' -55.9 NC_005869.1 + 15534 0.73 0.226634
Target:  5'- gCGCCGCGcGCgGCGGCgCcGgGCUACCg -3'
miRNA:   3'- gGUGGCGU-UGaUGCCG-GaCgCGAUGG- -5'
27456 3' -55.9 NC_005869.1 + 24851 0.72 0.232795
Target:  5'- cCCACUuCGcCUAccCGGCCcugGCGCUGCCa -3'
miRNA:   3'- -GGUGGcGUuGAU--GCCGGa--CGCGAUGG- -5'
27456 3' -55.9 NC_005869.1 + 16727 0.72 0.232795
Target:  5'- gCCGCCGCccGCUccagcgccGCGGCC-GCGCUgagcugcggcGCCa -3'
miRNA:   3'- -GGUGGCGu-UGA--------UGCCGGaCGCGA----------UGG- -5'
27456 3' -55.9 NC_005869.1 + 18797 0.72 0.258859
Target:  5'- cCgGCCGCGGCUcCGGCC-GCgGCU-CCg -3'
miRNA:   3'- -GgUGGCGUUGAuGCCGGaCG-CGAuGG- -5'
27456 3' -55.9 NC_005869.1 + 6865 0.72 0.265737
Target:  5'- gCCugCGCG---GCGGCC-GCuGCUACCc -3'
miRNA:   3'- -GGugGCGUugaUGCCGGaCG-CGAUGG- -5'
27456 3' -55.9 NC_005869.1 + 17590 0.71 0.272762
Target:  5'- cCCGCCcuCGGCUgccgagGCGGCCcaucGUGCUGCCc -3'
miRNA:   3'- -GGUGGc-GUUGA------UGCCGGa---CGCGAUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.