miRNA display CGI


Results 1 - 20 of 92 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27456 3' -55.9 NC_005869.1 + 1725 0.66 0.572275
Target:  5'- gCACCGUAGCUAgugUGGCuCUG-GuCUGCUu -3'
miRNA:   3'- gGUGGCGUUGAU---GCCG-GACgC-GAUGG- -5'
27456 3' -55.9 NC_005869.1 + 3153 0.69 0.37684
Target:  5'- -gGCCGCAGgUGCGGCagaUgaaagugacagacGCGCUGCg -3'
miRNA:   3'- ggUGGCGUUgAUGCCGg--A-------------CGCGAUGg -5'
27456 3' -55.9 NC_005869.1 + 3203 0.67 0.464787
Target:  5'- uCUGCCGCAcCUGCGGCCagGgGUgauuguCCc -3'
miRNA:   3'- -GGUGGCGUuGAUGCCGGa-CgCGau----GG- -5'
27456 3' -55.9 NC_005869.1 + 3608 0.66 0.539144
Target:  5'- gCCGCCGUccccGGCUGCuGCUguUGCUGCUg -3'
miRNA:   3'- -GGUGGCG----UUGAUGcCGGacGCGAUGG- -5'
27456 3' -55.9 NC_005869.1 + 3700 0.73 0.203358
Target:  5'- gCUGCCGCAGCU-CcGCCaGCGcCUGCCg -3'
miRNA:   3'- -GGUGGCGUUGAuGcCGGaCGC-GAUGG- -5'
27456 3' -55.9 NC_005869.1 + 3886 0.67 0.474062
Target:  5'- cCCACCccggagaGCGACccUGCGguGCCUGCuaCUACCa -3'
miRNA:   3'- -GGUGG-------CGUUG--AUGC--CGGACGc-GAUGG- -5'
27456 3' -55.9 NC_005869.1 + 5542 0.67 0.485524
Target:  5'- gCACCGCGGCccCGGCaagcuccGCGCcaaggGCCa -3'
miRNA:   3'- gGUGGCGUUGauGCCGga-----CGCGa----UGG- -5'
27456 3' -55.9 NC_005869.1 + 5817 0.7 0.342735
Target:  5'- cCCAUCGcCGAC--CGGCCccUGCGCU-CCg -3'
miRNA:   3'- -GGUGGC-GUUGauGCCGG--ACGCGAuGG- -5'
27456 3' -55.9 NC_005869.1 + 6497 0.71 0.287258
Target:  5'- -aACCGUGGCUG-GGCCgUGCGCcuccUGCCg -3'
miRNA:   3'- ggUGGCGUUGAUgCCGG-ACGCG----AUGG- -5'
27456 3' -55.9 NC_005869.1 + 6668 0.67 0.475099
Target:  5'- cCUGCCaGCGGCggGCGGCCaggGCGCg--- -3'
miRNA:   3'- -GGUGG-CGUUGa-UGCCGGa--CGCGaugg -5'
27456 3' -55.9 NC_005869.1 + 6865 0.72 0.265737
Target:  5'- gCCugCGCG---GCGGCC-GCuGCUACCc -3'
miRNA:   3'- -GGugGCGUugaUGCCGGaCG-CGAUGG- -5'
27456 3' -55.9 NC_005869.1 + 7445 0.66 0.561168
Target:  5'- gCGCCGCGACUacGCGGaCUgggaggaggGCGUcaugGCCc -3'
miRNA:   3'- gGUGGCGUUGA--UGCC-GGa--------CGCGa---UGG- -5'
27456 3' -55.9 NC_005869.1 + 7510 0.67 0.496056
Target:  5'- gCACCucGCGGCgguggGCGagcaCCUGCGCgGCCa -3'
miRNA:   3'- gGUGG--CGUUGa----UGCc---GGACGCGaUGG- -5'
27456 3' -55.9 NC_005869.1 + 7671 0.74 0.172347
Target:  5'- cCCAgCUGCGGCgccGCcGCCUGCGCggGCCg -3'
miRNA:   3'- -GGU-GGCGUUGa--UGcCGGACGCGa-UGG- -5'
27456 3' -55.9 NC_005869.1 + 7686 0.66 0.565604
Target:  5'- uCCugCGcCAGCUcgGCgaggucuggguugugGGCCagcagGUGCUGCCa -3'
miRNA:   3'- -GGugGC-GUUGA--UG---------------CCGGa----CGCGAUGG- -5'
27456 3' -55.9 NC_005869.1 + 8374 0.68 0.444521
Target:  5'- -gACCGCggUggaGCuGGCCcGCGCcGCCg -3'
miRNA:   3'- ggUGGCGuuGa--UG-CCGGaCGCGaUGG- -5'
27456 3' -55.9 NC_005869.1 + 8462 0.66 0.561168
Target:  5'- aCCACCGCcACUG-GGaCaGCGCccugGCCa -3'
miRNA:   3'- -GGUGGCGuUGAUgCCgGaCGCGa---UGG- -5'
27456 3' -55.9 NC_005869.1 + 8574 0.66 0.550122
Target:  5'- gCCGCCGCcGCcgaGGCC-GCGgagGCCg -3'
miRNA:   3'- -GGUGGCGuUGaugCCGGaCGCga-UGG- -5'
27456 3' -55.9 NC_005869.1 + 8677 0.69 0.36877
Target:  5'- aCCGCCGCGucaucgcccACgccuCGcGUCUGCGCcgcgACCa -3'
miRNA:   3'- -GGUGGCGU---------UGau--GC-CGGACGCGa---UGG- -5'
27456 3' -55.9 NC_005869.1 + 8824 0.67 0.489724
Target:  5'- cCUACCGCGAaaacaGCGGggacguguccgagauCCUGCGCcaggugGCCa -3'
miRNA:   3'- -GGUGGCGUUga---UGCC---------------GGACGCGa-----UGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.