miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27456 3' -55.9 NC_005869.1 + 27880 0.69 0.386864
Target:  5'- cUCuCUGCAagaagGCcACGGUCUGCGCUucaGCCu -3'
miRNA:   3'- -GGuGGCGU-----UGaUGCCGGACGCGA---UGG- -5'
27456 3' -55.9 NC_005869.1 + 31974 0.71 0.287258
Target:  5'- aUACCGCGGCc-CGGCUguUGCGCacgGCCc -3'
miRNA:   3'- gGUGGCGUUGauGCCGG--ACGCGa--UGG- -5'
27456 3' -55.9 NC_005869.1 + 17838 0.71 0.29473
Target:  5'- cUCGgCGCAGCgGCGGCaggcgGCGgUACCg -3'
miRNA:   3'- -GGUgGCGUUGaUGCCGga---CGCgAUGG- -5'
27456 3' -55.9 NC_005869.1 + 21410 0.71 0.302353
Target:  5'- uCCugCGCAACUuuGaGCCcaUGUGCcGCCa -3'
miRNA:   3'- -GGugGCGUUGAugC-CGG--ACGCGaUGG- -5'
27456 3' -55.9 NC_005869.1 + 15996 0.71 0.310127
Target:  5'- gCGCCGCugGACgggGCGGCgCgUGCGCgcCCa -3'
miRNA:   3'- gGUGGCG--UUGa--UGCCG-G-ACGCGauGG- -5'
27456 3' -55.9 NC_005869.1 + 15168 0.7 0.329402
Target:  5'- cUCGCCcaGCAACaACuuuggcuggggacugGGCCUGCGCU-CCa -3'
miRNA:   3'- -GGUGG--CGUUGaUG---------------CCGGACGCGAuGG- -5'
27456 3' -55.9 NC_005869.1 + 14245 0.7 0.334356
Target:  5'- aCACgCGCAACUuCcGCCUGgGCUAUg -3'
miRNA:   3'- gGUG-GCGUUGAuGcCGGACgCGAUGg -5'
27456 3' -55.9 NC_005869.1 + 17371 0.7 0.351264
Target:  5'- cCCACCGCAcacccaggcaGgUGCGGCUgacggcgGUGgUGCCc -3'
miRNA:   3'- -GGUGGCGU----------UgAUGCCGGa------CGCgAUGG- -5'
27456 3' -55.9 NC_005869.1 + 3153 0.69 0.37684
Target:  5'- -gGCCGCAGgUGCGGCagaUgaaagugacagacGCGCUGCg -3'
miRNA:   3'- ggUGGCGUUgAUGCCGg--A-------------CGCGAUGg -5'
27456 3' -55.9 NC_005869.1 + 12231 0.71 0.287258
Target:  5'- gCGCUGCGGCUGCuGGUgaGCGaggUGCCg -3'
miRNA:   3'- gGUGGCGUUGAUG-CCGgaCGCg--AUGG- -5'
27456 3' -55.9 NC_005869.1 + 23692 0.71 0.287258
Target:  5'- uCCAgCUGCAGCaGCGGCC-GgGCcACCg -3'
miRNA:   3'- -GGU-GGCGUUGaUGCCGGaCgCGaUGG- -5'
27456 3' -55.9 NC_005869.1 + 17590 0.71 0.272762
Target:  5'- cCCGCCcuCGGCUgccgagGCGGCCcaucGUGCUGCCc -3'
miRNA:   3'- -GGUGGc-GUUGA------UGCCGGa---CGCGAUGG- -5'
27456 3' -55.9 NC_005869.1 + 16651 0.83 0.043676
Target:  5'- gCGCCGCAGCUcagcGCGGCCgcgGCGCUggagcgggcggcgGCCg -3'
miRNA:   3'- gGUGGCGUUGA----UGCCGGa--CGCGA-------------UGG- -5'
27456 3' -55.9 NC_005869.1 + 32098 0.76 0.126307
Target:  5'- aCCACUGCuACUGCuGCCgcUGCGCcACCa -3'
miRNA:   3'- -GGUGGCGuUGAUGcCGG--ACGCGaUGG- -5'
27456 3' -55.9 NC_005869.1 + 31414 0.74 0.177206
Target:  5'- cCCGCCGCuGCgccccgAUGGCCUcCGCcGCCa -3'
miRNA:   3'- -GGUGGCGuUGa-----UGCCGGAcGCGaUGG- -5'
27456 3' -55.9 NC_005869.1 + 24498 0.74 0.182185
Target:  5'- gCCGCCGCGGCgccaggagaACGGaaCCUGCGCcccggACCc -3'
miRNA:   3'- -GGUGGCGUUGa--------UGCC--GGACGCGa----UGG- -5'
27456 3' -55.9 NC_005869.1 + 23873 0.74 0.197873
Target:  5'- uCCGCCGCucCUGCacgggcggagaGGCCgcGCGCUugCg -3'
miRNA:   3'- -GGUGGCGuuGAUG-----------CCGGa-CGCGAugG- -5'
27456 3' -55.9 NC_005869.1 + 9954 0.73 0.220611
Target:  5'- aCCACgCGCucgGCcaggAUGGCCUGCGCaUGCg -3'
miRNA:   3'- -GGUG-GCGu--UGa---UGCCGGACGCG-AUGg -5'
27456 3' -55.9 NC_005869.1 + 24851 0.72 0.232795
Target:  5'- cCCACUuCGcCUAccCGGCCcugGCGCUGCCa -3'
miRNA:   3'- -GGUGGcGUuGAU--GCCGGa--CGCGAUGG- -5'
27456 3' -55.9 NC_005869.1 + 18797 0.72 0.258859
Target:  5'- cCgGCCGCGGCUcCGGCC-GCgGCU-CCg -3'
miRNA:   3'- -GgUGGCGUUGAuGCCGGaCG-CGAuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.