miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27456 5' -55.2 NC_005869.1 + 20675 1.09 0.000463
Target:  5'- cUGGGCAACGGCCGCUACUGCAAGUUCc -3'
miRNA:   3'- -ACCCGUUGCCGGCGAUGACGUUCAAG- -5'
27456 5' -55.2 NC_005869.1 + 9901 0.76 0.129367
Target:  5'- gUGGGCuccuGCuGCCGCUGCUGCA-GUg- -3'
miRNA:   3'- -ACCCGu---UGcCGGCGAUGACGUuCAag -5'
27456 5' -55.2 NC_005869.1 + 18802 0.73 0.193695
Target:  5'- cGcGGCucCGGCCGCgGCUccgGCGAGUUCc -3'
miRNA:   3'- aC-CCGuuGCCGGCGaUGA---CGUUCAAG- -5'
27456 5' -55.2 NC_005869.1 + 16465 0.73 0.193695
Target:  5'- aGGGCGGgGGaCCGCcGCUGCGGGc-- -3'
miRNA:   3'- aCCCGUUgCC-GGCGaUGACGUUCaag -5'
27456 5' -55.2 NC_005869.1 + 10344 0.73 0.210712
Target:  5'- gGuGGCc-CGGCCGCUGCUGCAGc--- -3'
miRNA:   3'- aC-CCGuuGCCGGCGAUGACGUUcaag -5'
27456 5' -55.2 NC_005869.1 + 16317 0.72 0.229002
Target:  5'- -uGGCaAGCGGUCGCUGCUGgGGGagUCa -3'
miRNA:   3'- acCCG-UUGCCGGCGAUGACgUUCa-AG- -5'
27456 5' -55.2 NC_005869.1 + 8625 0.72 0.23539
Target:  5'- gUGGGCGaugacGCGGCgGUUGauguucuggauCUGCGGGUUCc -3'
miRNA:   3'- -ACCCGU-----UGCCGgCGAU-----------GACGUUCAAG- -5'
27456 5' -55.2 NC_005869.1 + 6807 0.72 0.23539
Target:  5'- gGGGUAgcaGCGGCCGCcGC-GCAGGcUCu -3'
miRNA:   3'- aCCCGU---UGCCGGCGaUGaCGUUCaAG- -5'
27456 5' -55.2 NC_005869.1 + 17630 0.72 0.248615
Target:  5'- gGGGCAugGGCUcggugaGCgGCUGCAGGc-- -3'
miRNA:   3'- aCCCGUugCCGG------CGaUGACGUUCaag -5'
27456 5' -55.2 NC_005869.1 + 23343 0.71 0.284362
Target:  5'- cGGGCAGCGcGCC-CUGC-GCGAGa-- -3'
miRNA:   3'- aCCCGUUGC-CGGcGAUGaCGUUCaag -5'
27456 5' -55.2 NC_005869.1 + 16684 0.7 0.29976
Target:  5'- cGGGCGGCGGCCGCcgugcccCUGCc----- -3'
miRNA:   3'- aCCCGUUGCCGGCGau-----GACGuucaag -5'
27456 5' -55.2 NC_005869.1 + 12645 0.7 0.307697
Target:  5'- -cGGCAGCGGCgGCUGCcgGCGGcGUa- -3'
miRNA:   3'- acCCGUUGCCGgCGAUGa-CGUU-CAag -5'
27456 5' -55.2 NC_005869.1 + 12904 0.7 0.332467
Target:  5'- uUGGGCGccaccGCGGCCGCgcgaUGgAAGUa- -3'
miRNA:   3'- -ACCCGU-----UGCCGGCGaug-ACgUUCAag -5'
27456 5' -55.2 NC_005869.1 + 12709 0.7 0.332467
Target:  5'- aGGGCAuacgccgccgGCaGCCGCcGCUGCcGGUUg -3'
miRNA:   3'- aCCCGU----------UGcCGGCGaUGACGuUCAAg -5'
27456 5' -55.2 NC_005869.1 + 7944 0.69 0.355986
Target:  5'- cGGGgGACGaggagcugcuggacGCCGC-GCUGCAGGUg- -3'
miRNA:   3'- aCCCgUUGC--------------CGGCGaUGACGUUCAag -5'
27456 5' -55.2 NC_005869.1 + 18616 0.69 0.358671
Target:  5'- cUGGGCGGCGGCgggCGCUug-GCGGGa-- -3'
miRNA:   3'- -ACCCGUUGCCG---GCGAugaCGUUCaag -5'
27456 5' -55.2 NC_005869.1 + 6863 0.69 0.358671
Target:  5'- cUGcGCGGCGGCCGCUGCUacccCAAcUUCa -3'
miRNA:   3'- -ACcCGUUGCCGGCGAUGAc---GUUcAAG- -5'
27456 5' -55.2 NC_005869.1 + 21770 0.69 0.358671
Target:  5'- aGGGCGugGGCCGaguugGCguagaGgAGGUUCu -3'
miRNA:   3'- aCCCGUugCCGGCga---UGa----CgUUCAAG- -5'
27456 5' -55.2 NC_005869.1 + 12585 0.69 0.358671
Target:  5'- uUGGGCGACGaggacgacGCgGCgcgGCUGCAGGc-- -3'
miRNA:   3'- -ACCCGUUGC--------CGgCGa--UGACGUUCaag -5'
27456 5' -55.2 NC_005869.1 + 11728 0.69 0.376926
Target:  5'- gGGGCGGCGGCgGCggggGUGAGcgCg -3'
miRNA:   3'- aCCCGUUGCCGgCGaugaCGUUCaaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.