Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27456 | 5' | -55.2 | NC_005869.1 | + | 20675 | 1.09 | 0.000463 |
Target: 5'- cUGGGCAACGGCCGCUACUGCAAGUUCc -3' miRNA: 3'- -ACCCGUUGCCGGCGAUGACGUUCAAG- -5' |
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27456 | 5' | -55.2 | NC_005869.1 | + | 21224 | 0.67 | 0.498593 |
Target: 5'- cGGGCAAUGaCCGC--CUGCucacucccaacGAGUUCg -3' miRNA: 3'- aCCCGUUGCcGGCGauGACG-----------UUCAAG- -5' |
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27456 | 5' | -55.2 | NC_005869.1 | + | 12141 | 0.67 | 0.498593 |
Target: 5'- cUGGGCAGCcuGGCCGC-GCUGaaugccUUCa -3' miRNA: 3'- -ACCCGUUG--CCGGCGaUGACguuc--AAG- -5' |
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27456 | 5' | -55.2 | NC_005869.1 | + | 3653 | 0.67 | 0.487747 |
Target: 5'- cGGaGCuGCGGCaGCaGCUGCAGGa-- -3' miRNA: 3'- aCC-CGuUGCCGgCGaUGACGUUCaag -5' |
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27456 | 5' | -55.2 | NC_005869.1 | + | 8113 | 0.67 | 0.487747 |
Target: 5'- gUGGGCGgucuggaagauGCGGCCGCagUGCUcGCAc-UUCu -3' miRNA: 3'- -ACCCGU-----------UGCCGGCG--AUGA-CGUucAAG- -5' |
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27456 | 5' | -55.2 | NC_005869.1 | + | 5872 | 0.67 | 0.477013 |
Target: 5'- gGGGUAGCGGUCGUUgggcACUaaugGCGAGg-- -3' miRNA: 3'- aCCCGUUGCCGGCGA----UGA----CGUUCaag -5' |
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27456 | 5' | -55.2 | NC_005869.1 | + | 6208 | 0.67 | 0.445542 |
Target: 5'- cGGGCGAUGGCuuCGgUGgUGCGGGcgUCc -3' miRNA: 3'- aCCCGUUGCCG--GCgAUgACGUUCa-AG- -5' |
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27456 | 5' | -55.2 | NC_005869.1 | + | 19258 | 0.68 | 0.425218 |
Target: 5'- --cGCAGCGGCUGCaGCUGCGc-UUCg -3' miRNA: 3'- accCGUUGCCGGCGaUGACGUucAAG- -5' |
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27456 | 5' | -55.2 | NC_005869.1 | + | 11728 | 0.69 | 0.376926 |
Target: 5'- gGGGCGGCGGCgGCggggGUGAGcgCg -3' miRNA: 3'- aCCCGUUGCCGgCGaugaCGUUCaaG- -5' |
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27456 | 5' | -55.2 | NC_005869.1 | + | 12585 | 0.69 | 0.358671 |
Target: 5'- uUGGGCGACGaggacgacGCgGCgcgGCUGCAGGc-- -3' miRNA: 3'- -ACCCGUUGC--------CGgCGa--UGACGUUCaag -5' |
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27456 | 5' | -55.2 | NC_005869.1 | + | 18802 | 0.73 | 0.193695 |
Target: 5'- cGcGGCucCGGCCGCgGCUccgGCGAGUUCc -3' miRNA: 3'- aC-CCGuuGCCGGCGaUGA---CGUUCAAG- -5' |
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27456 | 5' | -55.2 | NC_005869.1 | + | 16317 | 0.72 | 0.229002 |
Target: 5'- -uGGCaAGCGGUCGCUGCUGgGGGagUCa -3' miRNA: 3'- acCCG-UUGCCGGCGAUGACgUUCa-AG- -5' |
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27456 | 5' | -55.2 | NC_005869.1 | + | 6807 | 0.72 | 0.23539 |
Target: 5'- gGGGUAgcaGCGGCCGCcGC-GCAGGcUCu -3' miRNA: 3'- aCCCGU---UGCCGGCGaUGaCGUUCaAG- -5' |
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27456 | 5' | -55.2 | NC_005869.1 | + | 8625 | 0.72 | 0.23539 |
Target: 5'- gUGGGCGaugacGCGGCgGUUGauguucuggauCUGCGGGUUCc -3' miRNA: 3'- -ACCCGU-----UGCCGgCGAU-----------GACGUUCAAG- -5' |
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27456 | 5' | -55.2 | NC_005869.1 | + | 16684 | 0.7 | 0.29976 |
Target: 5'- cGGGCGGCGGCCGCcgugcccCUGCc----- -3' miRNA: 3'- aCCCGUUGCCGGCGau-----GACGuucaag -5' |
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27456 | 5' | -55.2 | NC_005869.1 | + | 12645 | 0.7 | 0.307697 |
Target: 5'- -cGGCAGCGGCgGCUGCcgGCGGcGUa- -3' miRNA: 3'- acCCGUUGCCGgCGAUGa-CGUU-CAag -5' |
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27456 | 5' | -55.2 | NC_005869.1 | + | 9901 | 0.76 | 0.129367 |
Target: 5'- gUGGGCuccuGCuGCCGCUGCUGCA-GUg- -3' miRNA: 3'- -ACCCGu---UGcCGGCGAUGACGUuCAag -5' |
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27456 | 5' | -55.2 | NC_005869.1 | + | 17553 | 0.66 | 0.542972 |
Target: 5'- gGGGCGcgaggcgcacGCGGCgCGCgcgggGCUGgAGGggCu -3' miRNA: 3'- aCCCGU----------UGCCG-GCGa----UGACgUUCaaG- -5' |
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27456 | 5' | -55.2 | NC_005869.1 | + | 17161 | 0.66 | 0.509546 |
Target: 5'- cGGGCGGgGGgCGC--CUGCAGGa-- -3' miRNA: 3'- aCCCGUUgCCgGCGauGACGUUCaag -5' |
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27456 | 5' | -55.2 | NC_005869.1 | + | 24478 | 0.67 | 0.498593 |
Target: 5'- aGGGCGccucgGCGGCCuccGCgGCUGCGccgGGggCg -3' miRNA: 3'- aCCCGU-----UGCCGG---CGaUGACGU---UCaaG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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