miRNA display CGI


Results 1 - 20 of 35 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27456 5' -55.2 NC_005869.1 + 3002 0.66 0.542972
Target:  5'- gGGGCugaagcugcccaGGCGGCCGCccacaaacauggUGCUGCGgAGg-- -3'
miRNA:   3'- aCCCG------------UUGCCGGCG------------AUGACGU-UCaag -5'
27456 5' -55.2 NC_005869.1 + 3653 0.67 0.487747
Target:  5'- cGGaGCuGCGGCaGCaGCUGCAGGa-- -3'
miRNA:   3'- aCC-CGuUGCCGgCGaUGACGUUCaag -5'
27456 5' -55.2 NC_005869.1 + 5872 0.67 0.477013
Target:  5'- gGGGUAGCGGUCGUUgggcACUaaugGCGAGg-- -3'
miRNA:   3'- aCCCGUUGCCGGCGA----UGA----CGUUCaag -5'
27456 5' -55.2 NC_005869.1 + 6208 0.67 0.445542
Target:  5'- cGGGCGAUGGCuuCGgUGgUGCGGGcgUCc -3'
miRNA:   3'- aCCCGUUGCCG--GCgAUgACGUUCa-AG- -5'
27456 5' -55.2 NC_005869.1 + 6807 0.72 0.23539
Target:  5'- gGGGUAgcaGCGGCCGCcGC-GCAGGcUCu -3'
miRNA:   3'- aCCCGU---UGCCGGCGaUGaCGUUCaAG- -5'
27456 5' -55.2 NC_005869.1 + 6863 0.69 0.358671
Target:  5'- cUGcGCGGCGGCCGCUGCUacccCAAcUUCa -3'
miRNA:   3'- -ACcCGUUGCCGGCGAUGAc---GUUcAAG- -5'
27456 5' -55.2 NC_005869.1 + 7944 0.69 0.355986
Target:  5'- cGGGgGACGaggagcugcuggacGCCGC-GCUGCAGGUg- -3'
miRNA:   3'- aCCCgUUGC--------------CGGCGaUGACGUUCAag -5'
27456 5' -55.2 NC_005869.1 + 8113 0.67 0.487747
Target:  5'- gUGGGCGgucuggaagauGCGGCCGCagUGCUcGCAc-UUCu -3'
miRNA:   3'- -ACCCGU-----------UGCCGGCG--AUGA-CGUucAAG- -5'
27456 5' -55.2 NC_005869.1 + 8625 0.72 0.23539
Target:  5'- gUGGGCGaugacGCGGCgGUUGauguucuggauCUGCGGGUUCc -3'
miRNA:   3'- -ACCCGU-----UGCCGgCGAU-----------GACGUUCAAG- -5'
27456 5' -55.2 NC_005869.1 + 9897 0.67 0.466398
Target:  5'- aGGaGCAGCucaaggacaucGGCCGCUGCcaGCAGGa-- -3'
miRNA:   3'- aCC-CGUUG-----------CCGGCGAUGa-CGUUCaag -5'
27456 5' -55.2 NC_005869.1 + 9901 0.76 0.129367
Target:  5'- gUGGGCuccuGCuGCCGCUGCUGCA-GUg- -3'
miRNA:   3'- -ACCCGu---UGcCGGCGAUGACGUuCAag -5'
27456 5' -55.2 NC_005869.1 + 10344 0.73 0.210712
Target:  5'- gGuGGCc-CGGCCGCUGCUGCAGc--- -3'
miRNA:   3'- aC-CCGuuGCCGGCGAUGACGUUcaag -5'
27456 5' -55.2 NC_005869.1 + 11728 0.69 0.376926
Target:  5'- gGGGCGGCGGCgGCggggGUGAGcgCg -3'
miRNA:   3'- aCCCGUUGCCGgCGaugaCGUUCaaG- -5'
27456 5' -55.2 NC_005869.1 + 12141 0.67 0.498593
Target:  5'- cUGGGCAGCcuGGCCGC-GCUGaaugccUUCa -3'
miRNA:   3'- -ACCCGUUG--CCGGCGaUGACguuc--AAG- -5'
27456 5' -55.2 NC_005869.1 + 12585 0.69 0.358671
Target:  5'- uUGGGCGACGaggacgacGCgGCgcgGCUGCAGGc-- -3'
miRNA:   3'- -ACCCGUUGC--------CGgCGa--UGACGUUCaag -5'
27456 5' -55.2 NC_005869.1 + 12645 0.7 0.307697
Target:  5'- -cGGCAGCGGCgGCUGCcgGCGGcGUa- -3'
miRNA:   3'- acCCGUUGCCGgCGAUGa-CGUU-CAag -5'
27456 5' -55.2 NC_005869.1 + 12709 0.7 0.332467
Target:  5'- aGGGCAuacgccgccgGCaGCCGCcGCUGCcGGUUg -3'
miRNA:   3'- aCCCGU----------UGcCGGCGaUGACGuUCAAg -5'
27456 5' -55.2 NC_005869.1 + 12904 0.7 0.332467
Target:  5'- uUGGGCGccaccGCGGCCGCgcgaUGgAAGUa- -3'
miRNA:   3'- -ACCCGU-----UGCCGGCGaug-ACgUUCAag -5'
27456 5' -55.2 NC_005869.1 + 16317 0.72 0.229002
Target:  5'- -uGGCaAGCGGUCGCUGCUGgGGGagUCa -3'
miRNA:   3'- acCCG-UUGCCGGCGAUGACgUUCa-AG- -5'
27456 5' -55.2 NC_005869.1 + 16465 0.73 0.193695
Target:  5'- aGGGCGGgGGaCCGCcGCUGCGGGc-- -3'
miRNA:   3'- aCCCGUUgCC-GGCGaUGACGUUCaag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.