miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27462 5' -63.1 NC_005869.1 + 23692 1.12 0.000046
Target:  5'- uCCAGCUGCAGCAGCGGCCGGGCCACCg -3'
miRNA:   3'- -GGUCGACGUCGUCGCCGGCCCGGUGG- -5'
27462 5' -63.1 NC_005869.1 + 26424 0.81 0.016766
Target:  5'- cCCAGCUGCGGCGccGCcGCCugcgcGGGCCGCCc -3'
miRNA:   3'- -GGUCGACGUCGU--CGcCGG-----CCCGGUGG- -5'
27462 5' -63.1 NC_005869.1 + 18558 0.8 0.018305
Target:  5'- aCGGCgccgcgcGCGGCGGC-GCCGGGCUACCg -3'
miRNA:   3'- gGUCGa------CGUCGUCGcCGGCCCGGUGG- -5'
27462 5' -63.1 NC_005869.1 + 26190 0.78 0.025986
Target:  5'- aCCAGCacCAGCAGCaGCCGaGCCACCg -3'
miRNA:   3'- -GGUCGacGUCGUCGcCGGCcCGGUGG- -5'
27462 5' -63.1 NC_005869.1 + 21614 0.77 0.030057
Target:  5'- aCCAGgaGCAGCAGCaGCCGGGUguUg -3'
miRNA:   3'- -GGUCgaCGUCGUCGcCGGCCCGguGg -5'
27462 5' -63.1 NC_005869.1 + 24132 0.77 0.035777
Target:  5'- uUCA-CUGCAGCAGCGGCagcaGGaGCcCACCg -3'
miRNA:   3'- -GGUcGACGUCGUCGCCGg---CC-CG-GUGG- -5'
27462 5' -63.1 NC_005869.1 + 16172 0.76 0.036829
Target:  5'- -gAGCccgGCGGCAGCGG-CGGGcCCGCCc -3'
miRNA:   3'- ggUCGa--CGUCGUCGCCgGCCC-GGUGG- -5'
27462 5' -63.1 NC_005869.1 + 20722 0.76 0.040171
Target:  5'- -aGGCgcgGCGGCGGCGGCCGGcggcGgCGCCu -3'
miRNA:   3'- ggUCGa--CGUCGUCGCCGGCC----CgGUGG- -5'
27462 5' -63.1 NC_005869.1 + 24816 0.76 0.042562
Target:  5'- -aGGUgcgGCAgGCGGUGGCCGaGGCCAUCg -3'
miRNA:   3'- ggUCGa--CGU-CGUCGCCGGC-CCGGUGG- -5'
27462 5' -63.1 NC_005869.1 + 2589 0.75 0.046277
Target:  5'- cCCAGCgcuUGCGGCAcuggcugaagcugGCGGCgGaGGCCAUCg -3'
miRNA:   3'- -GGUCG---ACGUCGU-------------CGCCGgC-CCGGUGG- -5'
27462 5' -63.1 NC_005869.1 + 24567 0.74 0.052075
Target:  5'- uCgAGCUGCGGCcccgggagGGCGGCCGcgccGUCACCg -3'
miRNA:   3'- -GgUCGACGUCG--------UCGCCGGCc---CGGUGG- -5'
27462 5' -63.1 NC_005869.1 + 31072 0.74 0.053439
Target:  5'- gUAGCUGUaggAGCAGCGGCUGGggcugaaGCUGCCc -3'
miRNA:   3'- gGUCGACG---UCGUCGCCGGCC-------CGGUGG- -5'
27462 5' -63.1 NC_005869.1 + 8522 0.74 0.054995
Target:  5'- gCGGCcucgGCGGCGGCGGCCGGucucaggcgggcaGCUggGCCa -3'
miRNA:   3'- gGUCGa---CGUCGUCGCCGGCC-------------CGG--UGG- -5'
27462 5' -63.1 NC_005869.1 + 19745 0.73 0.063642
Target:  5'- gCCAuGUUGguGUAGCuGCCGGGCaugACCa -3'
miRNA:   3'- -GGU-CGACguCGUCGcCGGCCCGg--UGG- -5'
27462 5' -63.1 NC_005869.1 + 12643 0.73 0.065299
Target:  5'- aCCGGCaGCGGCGGCuGCCGGcggcguaugcccuGaCCGCCg -3'
miRNA:   3'- -GGUCGaCGUCGUCGcCGGCC-------------C-GGUGG- -5'
27462 5' -63.1 NC_005869.1 + 24412 0.73 0.06738
Target:  5'- cCCGGC-GCAGCcGCGGa--GGCCGCCg -3'
miRNA:   3'- -GGUCGaCGUCGuCGCCggcCCGGUGG- -5'
27462 5' -63.1 NC_005869.1 + 31775 0.73 0.06738
Target:  5'- cCCGGCUGCAaCuccaccuuGGCGuGCUGGGCUAUCa -3'
miRNA:   3'- -GGUCGACGUcG--------UCGC-CGGCCCGGUGG- -5'
27462 5' -63.1 NC_005869.1 + 18420 0.73 0.068738
Target:  5'- gCGGCUGCGGCgcacccccaGGaUGGCCGGcgcggagcgccugcGCCGCCg -3'
miRNA:   3'- gGUCGACGUCG---------UC-GCCGGCC--------------CGGUGG- -5'
27462 5' -63.1 NC_005869.1 + 17844 0.73 0.069328
Target:  5'- gCAGCgGCGGCAgGCGGCgGuaCCGCCg -3'
miRNA:   3'- gGUCGaCGUCGU-CGCCGgCccGGUGG- -5'
27462 5' -63.1 NC_005869.1 + 16593 0.73 0.069328
Target:  5'- aCCGGaaccGCcGCGG-GcGCCGGGCCACCg -3'
miRNA:   3'- -GGUCga--CGuCGUCgC-CGGCCCGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.