miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27462 5' -63.1 NC_005869.1 + 1623 0.67 0.182854
Target:  5'- gCAGCUgGCAGCGgugaagguGCGGgaGGGCUAUg -3'
miRNA:   3'- gGUCGA-CGUCGU--------CGCCggCCCGGUGg -5'
27462 5' -63.1 NC_005869.1 + 1739 0.67 0.196433
Target:  5'- aCCuGCUGgGGgAGUugagcgagcgcacgGGCCGGG-CACCu -3'
miRNA:   3'- -GGuCGACgUCgUCG--------------CCGGCCCgGUGG- -5'
27462 5' -63.1 NC_005869.1 + 1854 0.67 0.179951
Target:  5'- -uGGCggaGCAGguGCGGCagGGGCUgugcaucaucaggauGCCg -3'
miRNA:   3'- ggUCGa--CGUCguCGCCGg-CCCGG---------------UGG- -5'
27462 5' -63.1 NC_005869.1 + 1934 0.71 0.08946
Target:  5'- uCCGGCagugGCAGCGG-GGCCGGGaugcgggACCa -3'
miRNA:   3'- -GGUCGa---CGUCGUCgCCGGCCCgg-----UGG- -5'
27462 5' -63.1 NC_005869.1 + 1948 0.67 0.182854
Target:  5'- gCAGCaGUAGCAGUGGuggcgaaccCCGuGCCACUu -3'
miRNA:   3'- gGUCGaCGUCGUCGCC---------GGCcCGGUGG- -5'
27462 5' -63.1 NC_005869.1 + 2050 0.68 0.173337
Target:  5'- uCCGGUgGgGGCcguGCGcaacaGCCGGGCCGCg -3'
miRNA:   3'- -GGUCGaCgUCGu--CGC-----CGGCCCGGUGg -5'
27462 5' -63.1 NC_005869.1 + 2589 0.75 0.046277
Target:  5'- cCCAGCgcuUGCGGCAcuggcugaagcugGCGGCgGaGGCCAUCg -3'
miRNA:   3'- -GGUCG---ACGUCGU-------------CGCCGgC-CCGGUGG- -5'
27462 5' -63.1 NC_005869.1 + 3552 0.66 0.219303
Target:  5'- aCAGCaGCAGCcggggacGGCGGCgacgGGGUCugUg -3'
miRNA:   3'- gGUCGaCGUCG-------UCGCCGg---CCCGGugG- -5'
27462 5' -63.1 NC_005869.1 + 3666 0.7 0.105555
Target:  5'- gCAGCUGCAGgAGCugcgggagguGGUggagauacagcugCGGGCCACg -3'
miRNA:   3'- gGUCGACGUCgUCG----------CCG-------------GCCCGGUGg -5'
27462 5' -63.1 NC_005869.1 + 5441 0.71 0.100095
Target:  5'- -gGGCgGUGGCAGCGGCgGGGCgCGguuCCu -3'
miRNA:   3'- ggUCGaCGUCGUCGCCGgCCCG-GU---GG- -5'
27462 5' -63.1 NC_005869.1 + 5586 0.66 0.214218
Target:  5'- --cGCUGCGGCAGCGcucgcaCUGGGUCucgcacucgACCa -3'
miRNA:   3'- gguCGACGUCGUCGCc-----GGCCCGG---------UGG- -5'
27462 5' -63.1 NC_005869.1 + 5983 0.67 0.20328
Target:  5'- aCCGGCUGCGGguCGGgggguauaaaaGGCgCGGGCCggggugcgugGCCg -3'
miRNA:   3'- -GGUCGACGUC--GUCg----------CCG-GCCCGG----------UGG- -5'
27462 5' -63.1 NC_005869.1 + 6248 0.7 0.108843
Target:  5'- cCUGGCgaaGCAGCAGCGGUUaGGgCACUg -3'
miRNA:   3'- -GGUCGa--CGUCGUCGCCGGcCCgGUGG- -5'
27462 5' -63.1 NC_005869.1 + 6671 0.66 0.219874
Target:  5'- gCCAGCgGCG--GGCGGCCaGGgCGCg -3'
miRNA:   3'- -GGUCGaCGUcgUCGCCGGcCCgGUGg -5'
27462 5' -63.1 NC_005869.1 + 6802 0.66 0.23761
Target:  5'- -aAGUugggGUAGCAGCGGCC--GCCGCg -3'
miRNA:   3'- ggUCGa---CGUCGUCGCCGGccCGGUGg -5'
27462 5' -63.1 NC_005869.1 + 7609 0.69 0.14739
Target:  5'- gCCcGCgcagGCGGCGGCGccgcaGCUGGGCauagGCCa -3'
miRNA:   3'- -GGuCGa---CGUCGUCGC-----CGGCCCGg---UGG- -5'
27462 5' -63.1 NC_005869.1 + 7719 0.66 0.241917
Target:  5'- gCCAGCaGguGCugccagagggugucGGUGaGgCGGGCCugCa -3'
miRNA:   3'- -GGUCGaCguCG--------------UCGC-CgGCCCGGugG- -5'
27462 5' -63.1 NC_005869.1 + 7836 0.72 0.082198
Target:  5'- -uGGCgGCGGCGGUGGCUcGGCUGCUg -3'
miRNA:   3'- ggUCGaCGUCGUCGCCGGcCCGGUGG- -5'
27462 5' -63.1 NC_005869.1 + 7842 0.68 0.168746
Target:  5'- uCCAGC-GCuGCAgGCGGgCucuggacGGCCACCa -3'
miRNA:   3'- -GGUCGaCGuCGU-CGCCgGc------CCGGUGG- -5'
27462 5' -63.1 NC_005869.1 + 7938 0.66 0.243783
Target:  5'- aCgAGCUGCuuuccgaAGCGGCCGuGCCAg- -3'
miRNA:   3'- -GgUCGACGucg----UCGCCGGCcCGGUgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.